UHGV-0039224

Genome information

Genome length 33,640 bps

CDS count 48

Completeness 73.26% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039224
vOTU ID	vOTU-035723
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1232
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.81
Jumbo phage	No

Genome content
Genome length	33,640 bps
GC content	46.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.96%
Average CDS length	664.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039224_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0039224_1	UniRef90	UniRef90_UPI0002D1BEA9	collagen-like protein	NA
UHGV-0039224_1	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0039224_2	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0039224_2	PHROG	phrog_366	tail fiber protein	tail
UHGV-0039224_2	UniRef90	UniRef90_A0A414AVD2	NA	NA
UHGV-0039224_2	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-0039224_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0039224_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0039224_3	PHROG	phrog_12764	NA	unknown function
UHGV-0039224_3	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0039224_4	PHROG	phrog_26795	NA	unknown function
UHGV-0039224_4	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0039224_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0039224_5	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0039224_5	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0039224_5	NCBIFam	NF033679.1	DNRLRE domain-containing protein	NA
UHGV-0039224_5	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0039224_6	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0039224_6	UniRef90	UniRef90_A0A414AVE7	PhageMin_Tail domain-containing protein	NA
UHGV-0039224_6	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0039224_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039224_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0039224_6	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0039224_8	PHROG	phrog_88	major tail protein	tail
UHGV-0039224_8	UniRef90	UniRef90_A0A414AVG1	Phage tail protein	NA
UHGV-0039224_8	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0039224_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0039224_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0039224_9	Structural annotation	PF06141	NA	NA
UHGV-0039224_10	Structural annotation	TIGR01725	NA	NA
UHGV-0039224_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0039224_11	UniRef90	UniRef90_D9SQ11	Prophage pi2 protein	NA
UHGV-0039224_11	eggNOG-mapper	573061.Clocel_2434	head-tail adaptor	NA
UHGV-0039224_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0039224_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0039224_12	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0039224_12	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0039224_12	Structural annotation	TIGR01560	NA	NA
UHGV-0039224_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0039224_13	UniRef90	UniRef90_UPI001D143532	phage major capsid protein	NA
UHGV-0039224_13	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0039224_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0039224_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0039224_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0039224_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0039224_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0039224_14	UniRef90	UniRef90_UPI0019686A92	phage major capsid protein	NA
UHGV-0039224_14	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0039224_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0039224_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0039224_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0039224_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0039224_15	UniRef90	UniRef90_A0A414AVD7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0039224_15	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0039224_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0039224_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0039224_15	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0039224_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0039224_16	UniRef90	UniRef90_A0A414AVF4	Phage portal protein	NA
UHGV-0039224_16	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0039224_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0039224_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0039224_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0039224_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0039224_17	UniRef90	UniRef90_A0A414AVD9	Terminase large subunit	NA
UHGV-0039224_17	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0039224_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0039224_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0039224_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0039224_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0039224_18	PHROG	phrog_1066	NA	unknown function
UHGV-0039224_18	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0039224_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0039224_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039224_19	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0039224_19	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0039224_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0039224_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0039224_21	UniRef90	UniRef90_A0A414AVH1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0039224_21	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0039224_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0039224_21	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0039224_22	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0039224_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0039224_22	UniRef90	UniRef90_UPI001D092785	tyrosine-type recombinase/integrase	NA
UHGV-0039224_22	eggNOG-mapper	742740.HMPREF9474_04312	Belongs to the 'phage' integrase family	NA
UHGV-0039224_22	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0039224_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039224_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0039224_22	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0039224_26	PHROG	phrog_15198	NA	unknown function
UHGV-0039224_26	UniRef90	UniRef90_A0A0F0CH36	NA	NA
UHGV-0039224_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0039224_29	PHROG	phrog_15077	NA	unknown function
UHGV-0039224_29	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0039224_29	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0039224_29	Structural annotation	NF038070	NA	NA
UHGV-0039224_30	Structural annotation	PF16535, NF011863	NA	NA
UHGV-0039224_31	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0039224_31	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0039224_31	UniRef90	UniRef90_R0BUU1	Helicase ATP-binding domain-containing protein	NA
UHGV-0039224_31	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0039224_31	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0039224_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0039224_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0039224_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0039224_31	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0039224_32	UniRef90	UniRef90_A0A174K666	DNA/RNA helicase, superfamily II, SNF2 family	NA
UHGV-0039224_32	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0039224_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0039224_33	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039224_33	UniRef90	UniRef90_A0A3E2UDB6	HNH endonuclease	NA
UHGV-0039224_33	eggNOG-mapper	293826.Amet_4047	HNH endonuclease	NA
UHGV-0039224_33	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0039224_33	Structural annotation	PF13392	NA	NA
UHGV-0039224_34	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039224_34	UniRef90	UniRef90_R0A747	VRR-NUC domain-containing protein	NA
UHGV-0039224_34	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0039224_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0039224_34	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-0039224_35	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0039224_35	UniRef90	UniRef90_A0A3E2VRI7	Virulence-associated protein E	NA
UHGV-0039224_35	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0039224_35	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0039224_35	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0039224_35	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0039224_36	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0039224_36	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0039224_36	UniRef90	UniRef90_R0BH17	POLAc domain-containing protein	NA
UHGV-0039224_36	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0039224_36	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0039224_36	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0039224_36	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0039224_37	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0039224_37	UniRef90	UniRef90_A0A3E2VQQ5	NA	NA
UHGV-0039224_37	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0039224_37	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0039224_37	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0039224_40	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0039224_40	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039224_40	UniRef90	UniRef90_A0A7X2NL07	NA	NA
UHGV-0039224_40	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0039224_40	Pfam	PF10926	NA	DUF2800
UHGV-0039224_40	COG	COG2887	RecB family exonuclease	NA
UHGV-0039224_40	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0039224_41	PHROG	phrog_22695	NA	unknown function
UHGV-0039224_41	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-0039224_44	PHROG	phrog_989	NA	unknown function
UHGV-0039224_44	UniRef90	UniRef90_A0A414AVH8	LysR family transcriptional regulator	NA
UHGV-0039224_44	eggNOG-mapper	927704.SELR_04450	NA	NA
UHGV-0039224_44	Structural annotation	PF11372	NA	NA
UHGV-0039224_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039224_45	UniRef90	UniRef90_A0A414AVI3	XRE family transcriptional regulator	NA
UHGV-0039224_45	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0039224_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039224_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0039224_45	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0039224_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0039224_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039224_46	UniRef90	UniRef90_A0A414AVG0	Helix-turn-helix domain-containing protein	NA
UHGV-0039224_46	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039224_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039224_46	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0039224_46	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0039224_47	PHROG	phrog_87	metallo-protease	other
UHGV-0039224_47	UniRef90	UniRef90_A0A414AVJ1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0039224_47	eggNOG-mapper	742733.HMPREF9469_01856	NA	NA
UHGV-0039224_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0039224_48	KOfam	K14059	int; integrase	NA
UHGV-0039224_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0039224_48	UniRef90	UniRef90_A0A7X2NJU5	Site-specific integrase	NA
UHGV-0039224_48	eggNOG-mapper	97139.C824_03191	Belongs to the 'phage' integrase family	NA
UHGV-0039224_48	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0039224_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0039224_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039224_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039224_48	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA