UHGV-0039226

Genome information

Genome length 28,644 bps

CDS count 45

Completeness 69.86% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039226
vOTU ID	vOTU-018487
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1234
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.15
Jumbo phage	No

Genome content
Genome length	28,644 bps
GC content	48.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.24%
Average CDS length	577.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039226_1	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-0039226_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0039226_2	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0039226_3	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0039226_4	PHROG	phrog_13879	NA	unknown function
UHGV-0039226_4	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0039226_4	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0039226_5	PHROG	phrog_1194	NA	unknown function
UHGV-0039226_5	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0039226_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0039226_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0039226_6	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0039226_6	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0039226_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0039226_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0039226_7	PHROG	phrog_8355	NA	unknown function
UHGV-0039226_7	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-0039226_7	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0039226_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0039226_8	PHROG	phrog_8300	NA	unknown function
UHGV-0039226_8	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0039226_8	Structural annotation	PF06854	NA	NA
UHGV-0039226_9	PHROG	phrog_820	major tail protein	tail
UHGV-0039226_9	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0039226_9	COG	COG5492	NA	NA
UHGV-0039226_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0039226_10	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0039226_10	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0039226_10	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0039226_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0039226_10	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0039226_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0039226_11	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0039226_12	PHROG	phrog_8710	NA	unknown function
UHGV-0039226_12	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0039226_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0039226_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0039226_13	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0039226_14	PHROG	phrog_1378	NA	unknown function
UHGV-0039226_14	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0039226_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0039226_15	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0039226_15	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0039226_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0039226_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0039226_16	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0039226_18	eggNOG-mapper	272626.lin1730	Phage Mu protein F like protein	NA
UHGV-0039226_18	COG	COG2369	NA	NA
UHGV-0039226_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0039226_20	UniRef90	UniRef90_A0A6M5GD60	Minor capsid protein	NA
UHGV-0039226_20	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0039226_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0039226_20	COG	COG2369	NA	NA
UHGV-0039226_20	Structural annotation	PF06152	NA	NA
UHGV-0039226_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0039226_21	UniRef90	UniRef90_A0A1C7G7K7	Capsid protein	NA
UHGV-0039226_21	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0039226_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0039226_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0039226_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0039226_23	UniRef90	UniRef90_A0A1C7G6C9	Terminase	NA
UHGV-0039226_23	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0039226_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0039226_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0039226_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0039226_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0039226_24	UniRef90	UniRef90_R5FKE8	Terminase small subunit	NA
UHGV-0039226_24	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0039226_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0039226_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0039226_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0039226_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0039226_26	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0039226_26	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0039226_26	Pfam	PF07374	NA	DUF1492
UHGV-0039226_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0039226_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0039226_27	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0039226_28	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0039226_28	UniRef90	UniRef90_UPI001D09145F	bifunctional DNA primase/polymerase	NA
UHGV-0039226_28	eggNOG-mapper	411902.CLOBOL_06670	NA	NA
UHGV-0039226_28	Pfam	PF06048	NA	DUF927
UHGV-0039226_28	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0039226_28	COG	COG5519	NA	NA
UHGV-0039226_28	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0039226_29	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0039226_29	UniRef90	UniRef90_A0A0F0CD52	Prim-Pol domain-containing protein	NA
UHGV-0039226_29	eggNOG-mapper	1232453.BAIF02000110_gene773	AAA domain	NA
UHGV-0039226_29	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0039226_29	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0039226_29	COG	COG3598	RecA-family ATPase	NA
UHGV-0039226_32	eggNOG-mapper	411468.CLOSCI_03855	NA	NA
UHGV-0039226_33	UniRef90	UniRef90_A0A174IRC0	YmaF family	NA
UHGV-0039226_33	eggNOG-mapper	742735.HMPREF9467_01140	YmaF family	NA
UHGV-0039226_33	Pfam	PF12788	YmaF family	YmaF
UHGV-0039226_34	PHROG	phrog_7134	NA	unknown function
UHGV-0039226_34	UniRef90	UniRef90_A0A1W6BMZ4	Pathogenicity island protein	NA
UHGV-0039226_34	eggNOG-mapper	411902.CLOBOL_06678	NA	NA
UHGV-0039226_35	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0039226_35	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0039226_35	UniRef90	UniRef90_N9XIF8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0039226_35	eggNOG-mapper	742735.HMPREF9467_02386	Sigma-70, region 4	NA
UHGV-0039226_35	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0039226_35	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0039226_35	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0039226_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0039226_35	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0039226_35	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0039226_39	PHROG	phrog_4292	NA	unknown function
UHGV-0039226_40	PHROG	phrog_6329	NA	unknown function
UHGV-0039226_40	UniRef90	UniRef90_A0A174WZW0	NA	NA
UHGV-0039226_40	eggNOG-mapper	279010.BL03487	NA	NA
UHGV-0039226_43	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0039226_43	UniRef90	UniRef90_A0A414ASB2	Bro-N domain-containing protein	NA
UHGV-0039226_43	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0039226_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0039226_43	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0039226_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039226_44	UniRef90	UniRef90_UPI0006C815FC	helix-turn-helix domain-containing protein	NA
UHGV-0039226_44	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0039226_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039226_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0039226_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039226_45	UniRef90	UniRef90_A0A414ASB9	XRE family transcriptional regulator	NA
UHGV-0039226_45	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039226_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0039226_45	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0039226_45	Structural annotation	PF01381, NF041951, COG3655	NA	NA