UHGV-0039255

Genome information

Genome length 45,495 bps

CDS count 58

Completeness 90.84% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039255
vOTU ID	vOTU-059498
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1914
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.67
Jumbo phage	No

Genome content
Genome length	45,495 bps
GC content	39.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.92%
Average CDS length	724.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039255_1	KOfam	K21473	ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]	NA
UHGV-0039255_1	PHROG	phrog_14030	NA	unknown function
UHGV-0039255_1	UniRef90	UniRef90_C6JAY8	NlpC/P60 domain-containing protein	NA
UHGV-0039255_1	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0039255_1	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0039255_1	Structural annotation	PF05382, PF19087, NF033741, COG0791	NA	NA
UHGV-0039255_2	PHROG	phrog_1129	holin	lysis
UHGV-0039255_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0039255_2	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0039255_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0039255_2	Structural annotation	PF16079	NA	NA
UHGV-0039255_3	PHROG	phrog_4105	NA	unknown function
UHGV-0039255_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0039255_4	eggNOG-mapper	411469.EUBHAL_02683	NA	NA
UHGV-0039255_5	PHROG	phrog_2310	NA	unknown function
UHGV-0039255_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0039255_9	PHROG	phrog_18190	NA	unknown function
UHGV-0039255_9	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0039255_9	eggNOG-mapper	428125.CLOLEP_02759	pathogenesis	NA
UHGV-0039255_9	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0039255_9	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0039255_9	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0039255_9	Structural annotation	PF13306, PF07523, PF05113, NF033848, NF040978, COG3500	NA	NA
UHGV-0039255_10	PHROG	phrog_1194	NA	unknown function
UHGV-0039255_10	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0039255_10	Pfam	PF20458	NA	DUF6711
UHGV-0039255_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0039255_11	PHROG	phrog_28918	NA	unknown function
UHGV-0039255_11	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-0039255_11	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0039255_11	COG	COG5412	Phage-related protein	NA
UHGV-0039255_12	PHROG	phrog_706	NA	unknown function
UHGV-0039255_12	UniRef90	UniRef90_UPI00156F1927	Gp15 family bacteriophage protein	NA
UHGV-0039255_12	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0039255_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0039255_12	Structural annotation	PF06854	NA	NA
UHGV-0039255_13	PHROG	phrog_11299	NA	unknown function
UHGV-0039255_13	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0039255_13	Structural annotation	PF10666	NA	NA
UHGV-0039255_14	PHROG	phrog_3099	NA	unknown function
UHGV-0039255_14	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0039255_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0039255_15	PHROG	phrog_3266	tail completion	connector
UHGV-0039255_15	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0039255_15	Structural annotation	PF12691	NA	NA
UHGV-0039255_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0039255_16	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0039255_16	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0039255_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0039255_16	Structural annotation	PF11114	NA	NA
UHGV-0039255_17	PHROG	phrog_3366	NA	unknown function
UHGV-0039255_17	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0039255_17	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0039255_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0039255_18	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0039255_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-0039255_19	UniRef90	UniRef90_A0A417A964	Phage coat protein	NA
UHGV-0039255_19	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0039255_19	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0039255_19	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0039255_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0039255_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0039255_20	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0039255_20	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0039255_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0039255_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0039255_21	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0039255_21	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0039255_21	Structural annotation	PF14359	NA	NA
UHGV-0039255_22	PHROG	phrog_15041	NA	unknown function
UHGV-0039255_22	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0039255_22	Structural annotation	PF10827	NA	NA
UHGV-0039255_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0039255_23	UniRef90	UniRef90_A0A359MUF5	Phage capsid protein	NA
UHGV-0039255_23	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0039255_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0039255_23	COG	COG2369	NA	NA
UHGV-0039255_23	Structural annotation	PF06152, PF18812	NA	NA
UHGV-0039255_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0039255_24	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-0039255_24	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0039255_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0039255_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0039255_25	PHROG	phrog_10250	NA	unknown function
UHGV-0039255_25	UniRef90	UniRef90_A0A417Q599	PBSX family phage terminase large subunit	NA
UHGV-0039255_25	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0039255_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0039255_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0039255_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0039255_25	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0039255_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0039255_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0039255_26	UniRef90	UniRef90_UPI000E4FAAB2	terminase small subunit	NA
UHGV-0039255_26	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0039255_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0039255_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0039255_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0039255_26	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0039255_27	PHROG	phrog_7540	NA	unknown function
UHGV-0039255_27	eggNOG-mapper	1235792.C808_05329	NA	NA
UHGV-0039255_28	PHROG	phrog_6264	NA	unknown function
UHGV-0039255_28	eggNOG-mapper	1235792.C808_05328	NA	NA
UHGV-0039255_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0039255_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0039255_29	UniRef90	UniRef90_UPI0015D28C23	AAA family ATPase	NA
UHGV-0039255_29	eggNOG-mapper	1235792.C808_05327	Anion-transporting ATPase	NA
UHGV-0039255_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0039255_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0039255_29	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0039255_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0039255_30	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0039255_30	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0039255_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0039255_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0039255_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0039255_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0039255_32	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0039255_32	UniRef90	UniRef90_UPI000E507582	phage antirepressor KilAC domain-containing protein	NA
UHGV-0039255_32	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0039255_32	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0039255_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0039255_32	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0039255_32	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0039255_34	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-0039255_34	eggNOG-mapper	1321778.HMPREF1982_03732	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0039255_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0039255_34	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0039255_35	UniRef90	UniRef90_UPI000E4C9378	helix-turn-helix transcriptional regulator	NA
UHGV-0039255_35	eggNOG-mapper	742733.HMPREF9469_02677	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0039255_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0039255_35	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0039255_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0039255_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0039255_38	UniRef90	UniRef90_UPI000E4B7CD2	ATP-binding protein	NA
UHGV-0039255_38	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0039255_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0039255_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0039255_38	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0039255_39	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0039255_39	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0039255_39	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0039255_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0039255_40	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0039255_40	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0039255_40	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0039255_41	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0039255_41	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0039255_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0039255_42	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0039255_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0039255_43	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0039255_43	UniRef90	UniRef90_UPI000E49F6EC	NA	NA
UHGV-0039255_43	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0039255_43	Pfam	PF06378	NA	DUF1071
UHGV-0039255_43	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0039255_49	PHROG	phrog_585	NA	unknown function
UHGV-0039255_49	UniRef90	UniRef90_A0A413B154	NA	NA
UHGV-0039255_49	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-0039255_49	Pfam	PF10711	NA	DUF2513
UHGV-0039255_49	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0039255_50	PHROG	phrog_2232	NA	unknown function
UHGV-0039255_50	UniRef90	UniRef90_A0A417Q5B8	NA	NA
UHGV-0039255_50	eggNOG-mapper	397288.C806_01275	NA	NA
UHGV-0039255_50	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0039255_50	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0039255_52	UniRef90	UniRef90_A0A416BNK0	NA	NA
UHGV-0039255_52	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0039255_52	Pfam	PF05339	NA	DUF739
UHGV-0039255_52	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0039255_52	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0039255_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0039255_53	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0039255_53	UniRef90	UniRef90_A0A416B0P6	XRE family transcriptional regulator	NA
UHGV-0039255_53	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-0039255_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039255_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039255_53	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0039255_54	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0039255_54	UniRef90	UniRef90_A0A413KZA9	Abi family protein	NA
UHGV-0039255_54	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-0039255_54	PADLOC	AbiD	AbiD	Abi
UHGV-0039255_54	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0039255_54	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0039255_54	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0039255_55	PHROG	phrog_87	metallo-protease	other
UHGV-0039255_55	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0039255_55	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0039255_55	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0039255_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0039255_56	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0039255_56	PHROG	phrog_19856	NA	unknown function
UHGV-0039255_56	UniRef90	UniRef90_A0A417H3P2	Ftsk_gamma domain-containing protein	NA
UHGV-0039255_56	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0039255_56	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0039255_56	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0039255_56	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0039255_56	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0039255_57	KOfam	K14059	int; integrase	NA
UHGV-0039255_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0039255_57	UniRef90	UniRef90_A0A417H3Q5	Site-specific integrase	NA
UHGV-0039255_57	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0039255_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039255_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039255_57	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0039255_58	PHROG	phrog_19577	minor head protein	head and packaging
UHGV-0039255_58	eggNOG-mapper	1121115.AXVN01000032_gene374	NA	NA