UHGV-0039468

Genome information

Genome length 29,360 bps

CDS count 51

Completeness 68.53% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039468
vOTU ID	vOTU-036272
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Pilot_MoBio_Fiber_A_5_1019__NODE_3144_length_29360_cov_4.360482
BioSample	SAMN20031434
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.51
Jumbo phage	No

Genome content
Genome length	29,360 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.30%
Average CDS length	530.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039468_1	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0039468_1	PHROG	phrog_24603	NA	unknown function
UHGV-0039468_1	UniRef90	UniRef90_A0A1C6B3L7	Stage 0 sporulation protein G	NA
UHGV-0039468_1	eggNOG-mapper	742723.HMPREF9477_01341	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0039468_1	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0039468_1	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0039468_1	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0039468_2	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0039468_2	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0039468_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0039468_3	UniRef90	UniRef90_A0A8J6M769	Helix-turn-helix transcriptional regulator	NA
UHGV-0039468_3	eggNOG-mapper	1203606.HMPREF1526_01933	helix-turn-helix	NA
UHGV-0039468_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039468_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039468_3	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0039468_4	PHROG	phrog_1281	NA	unknown function
UHGV-0039468_4	UniRef90	UniRef90_A0A1V0QCF7	NA	NA
UHGV-0039468_4	eggNOG-mapper	548477.HMPREF0294_0391	Phage-associated protein	NA
UHGV-0039468_4	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0039468_4	COG	COG3600	NA	NA
UHGV-0039468_4	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0039468_6	UniRef90	UniRef90_A0A6L9HJX3	XRE family transcriptional regulator	NA
UHGV-0039468_6	eggNOG-mapper	97139.C824_02817	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0039468_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0039468_6	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0039468_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0039468_8	PHROG	phrog_15001	endolysin	lysis
UHGV-0039468_8	UniRef90	UniRef90_A0A1C6D3S9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039468_8	eggNOG-mapper	1378168.N510_01539	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039468_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0039468_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0039468_8	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0039468_11	PHROG	phrog_1129	holin	lysis
UHGV-0039468_11	UniRef90	UniRef90_A0A416QZD1	Enolase	NA
UHGV-0039468_11	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0039468_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0039468_11	Structural annotation	PF06946	NA	NA
UHGV-0039468_12	PHROG	phrog_937	hemolysin	other
UHGV-0039468_12	eggNOG-mapper	428125.CLOLEP_00170	NA	NA
UHGV-0039468_15	PHROG	phrog_5302	tail protein	tail
UHGV-0039468_15	UniRef90	UniRef90_UPI001EDFA717	bacterial Ig-like domain-containing protein	NA
UHGV-0039468_15	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0039468_15	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0039468_15	Structural annotation	COG1262	NA	NA
UHGV-0039468_17	PHROG	phrog_13589	NA	unknown function
UHGV-0039468_17	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0039468_17	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0039468_18	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0039468_18	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0039468_18	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0039468_20	PHROG	phrog_32744	NA	unknown function
UHGV-0039468_20	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0039468_20	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0039468_21	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0039468_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0039468_22	PHROG	phrog_23464	NA	unknown function
UHGV-0039468_22	UniRef90	UniRef90_A0A1C6B4Q1	Phage-related protein	NA
UHGV-0039468_22	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0039468_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0039468_22	Structural annotation	PF20155	NA	NA
UHGV-0039468_23	PHROG	phrog_706	NA	unknown function
UHGV-0039468_23	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0039468_23	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0039468_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0039468_23	Structural annotation	PF06854	NA	NA
UHGV-0039468_24	Structural annotation	PF20378	NA	NA
UHGV-0039468_25	PHROG	phrog_820	major tail protein	tail
UHGV-0039468_25	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0039468_25	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0039468_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0039468_26	PHROG	phrog_3266	tail completion	connector
UHGV-0039468_26	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0039468_26	Structural annotation	PF12691	NA	NA
UHGV-0039468_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0039468_27	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0039468_27	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0039468_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0039468_27	Structural annotation	PF11114	NA	NA
UHGV-0039468_28	PHROG	phrog_3366	NA	unknown function
UHGV-0039468_28	Pfam	PF20536	NA	DUF6751
UHGV-0039468_28	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0039468_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0039468_29	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0039468_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0039468_30	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0039468_30	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0039468_30	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0039468_30	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0039468_31	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0039468_31	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0039468_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0039468_31	Structural annotation	PF06810	NA	NA
UHGV-0039468_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0039468_34	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0039468_34	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0039468_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0039468_34	COG	COG2369	NA	NA
UHGV-0039468_34	Structural annotation	PF06152	NA	NA
UHGV-0039468_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0039468_35	UniRef90	UniRef90_A0A0X8VBF2	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0039468_35	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-0039468_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0039468_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0039468_36	PHROG	phrog_29775	NA	unknown function
UHGV-0039468_36	UniRef90	UniRef90_A0A1C6B5W6	Phage terminase, large subunit, PBSX family	NA
UHGV-0039468_36	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0039468_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0039468_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0039468_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0039468_36	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0039468_37	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0039468_37	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0039468_37	Structural annotation	PF13542	NA	NA
UHGV-0039468_38	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0039468_38	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0039468_39	UniRef90	UniRef90_A0A1C6IRM5	Transposase	NA
UHGV-0039468_39	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0039468_39	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0039468_41	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0039468_41	UniRef90	UniRef90_A0A1C6B6A0	NA	NA
UHGV-0039468_41	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0039468_41	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0039468_41	Structural annotation	PF18909	NA	NA
UHGV-0039468_44	PHROG	phrog_22543	NA	unknown function
UHGV-0039468_47	PHROG	phrog_37865	NA	unknown function
UHGV-0039468_48	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0039468_48	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0039468_48	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0039468_49	PHROG	phrog_25732	NA	unknown function
UHGV-0039468_51	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0039468_51	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA