UHGV-0039677

Genome information

Genome length 38,271 bps

CDS count 64

Completeness 98.72% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039677
vOTU ID	vOTU-013882
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1152
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.56
Jumbo phage	No

Genome content
Genome length	38,271 bps
GC content	42.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.27%
Average CDS length	544.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039677_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0039677_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039677_1	UniRef90	UniRef90_B0G4K1	DNA-binding helix-turn-helix protein	NA
UHGV-0039677_1	eggNOG-mapper	411461.DORFOR_01188	transcriptional regulator, XRE family	NA
UHGV-0039677_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039677_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0039677_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0039677_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0039677_2	PHROG	phrog_435	endolysin	lysis
UHGV-0039677_2	UniRef90	UniRef90_A0A3E5EGC6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039677_2	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039677_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0039677_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0039677_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039677_2	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0039677_3	PHROG	phrog_443	holin	lysis
UHGV-0039677_3	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0039677_3	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0039677_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0039677_3	Structural annotation	PF16945	NA	NA
UHGV-0039677_4	PHROG	phrog_4105	NA	unknown function
UHGV-0039677_4	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0039677_5	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-0039677_6	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0039677_6	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0039677_7	PHROG	phrog_32322	NA	unknown function
UHGV-0039677_7	UniRef90	UniRef90_A0A413QMT2	Ig-like_bact domain-containing protein	NA
UHGV-0039677_7	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-0039677_7	Pfam	PF13754	NA	Big_3_4
UHGV-0039677_7	Structural annotation	PF13754	NA	NA
UHGV-0039677_8	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0039677_8	PHROG	phrog_11157	NA	unknown function
UHGV-0039677_8	UniRef90	UniRef90_B0G3A5	Big_13 domain-containing protein	NA
UHGV-0039677_8	eggNOG-mapper	411461.DORFOR_01182	NA	NA
UHGV-0039677_8	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0039677_8	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0039677_8	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0039677_8	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0039677_8	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0039677_9	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-0039677_10	PHROG	phrog_12931	NA	unknown function
UHGV-0039677_10	eggNOG-mapper	411461.DORFOR_01180	NA	NA
UHGV-0039677_12	PHROG	phrog_13141	NA	unknown function
UHGV-0039677_12	UniRef90	UniRef90_UPI00156D68EE	H-type lectin domain-containing protein	NA
UHGV-0039677_12	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0039677_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0039677_13	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0039677_13	eggNOG-mapper	411461.DORFOR_01177	NA	NA
UHGV-0039677_13	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0039677_14	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0039677_14	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0039677_14	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0039677_15	PHROG	phrog_19074	NA	unknown function
UHGV-0039677_15	UniRef90	UniRef90_A0A413QNB2	Phage tail tape measure protein	NA
UHGV-0039677_15	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0039677_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039677_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0039677_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0039677_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0039677_16	PHROG	phrog_706	NA	unknown function
UHGV-0039677_16	UniRef90	UniRef90_B0G4I7	Bacteriophage Gp15 protein	NA
UHGV-0039677_16	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0039677_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0039677_16	Structural annotation	PF06854	NA	NA
UHGV-0039677_17	PHROG	phrog_4450	NA	unknown function
UHGV-0039677_17	UniRef90	UniRef90_A0A7X3SKC0	AP endonuclease	NA
UHGV-0039677_17	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0039677_17	Pfam	PF20378	NA	DUF6673
UHGV-0039677_18	PHROG	phrog_820	major tail protein	tail
UHGV-0039677_18	UniRef90	UniRef90_A0A412UWV6	S-l_SbsC_C domain-containing protein	NA
UHGV-0039677_18	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0039677_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0039677_19	PHROG	phrog_3266	tail completion	connector
UHGV-0039677_19	Structural annotation	PF12691	NA	NA
UHGV-0039677_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0039677_20	UniRef90	UniRef90_UPI001E609FF9	minor capsid protein	NA
UHGV-0039677_20	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0039677_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0039677_20	Structural annotation	PF11114	NA	NA
UHGV-0039677_21	PHROG	phrog_3366	NA	unknown function
UHGV-0039677_21	eggNOG-mapper	573061.Clocel_3539	NA	NA
UHGV-0039677_21	Pfam	PF20536	NA	DUF6751
UHGV-0039677_21	Structural annotation	PF20536	NA	NA
UHGV-0039677_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0039677_22	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0039677_23	PHROG	phrog_283	major head protein	head and packaging
UHGV-0039677_23	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0039677_23	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0039677_23	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0039677_23	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0039677_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0039677_24	UniRef90	UniRef90_A0A173RCF7	Phage minor structural protein GP20	NA
UHGV-0039677_24	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-0039677_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0039677_24	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0039677_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0039677_25	UniRef90	UniRef90_A0A173RCB2	Phage minor capsid protein 2	NA
UHGV-0039677_25	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0039677_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0039677_25	COG	COG2369	NA	NA
UHGV-0039677_25	Structural annotation	PF06152	NA	NA
UHGV-0039677_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0039677_26	UniRef90	UniRef90_B0G4H6	Putative phage minor capsid protein	NA
UHGV-0039677_26	eggNOG-mapper	411461.DORFOR_01163	NA	NA
UHGV-0039677_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0039677_27	eggNOG-mapper	411461.DORFOR_01163	NA	NA
UHGV-0039677_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0039677_28	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0039677_28	UniRef90	UniRef90_B0G4H5	Phage terminase, large subunit, PBSX family	NA
UHGV-0039677_28	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0039677_28	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0039677_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0039677_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0039677_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0039677_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0039677_28	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0039677_29	PHROG	phrog_11237	NA	unknown function
UHGV-0039677_29	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0039677_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0039677_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0039677_30	UniRef90	UniRef90_B0G4H3	Site-specific recombinase, phage integrase family	NA
UHGV-0039677_30	eggNOG-mapper	411461.DORFOR_01160	Belongs to the 'phage' integrase family	NA
UHGV-0039677_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0039677_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039677_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0039677_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0039677_33	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0039677_33	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0039677_33	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0039677_33	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0039677_33	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0039677_33	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0039677_34	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0039677_34	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0039677_35	PHROG	phrog_15198	NA	unknown function
UHGV-0039677_35	UniRef90	UniRef90_B0G4G8	NA	NA
UHGV-0039677_35	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0039677_35	Pfam	PF04448	NA	DUF551
UHGV-0039677_36	PHROG	phrog_15198	NA	unknown function
UHGV-0039677_36	UniRef90	UniRef90_A0A8B3AJ13	NA	NA
UHGV-0039677_36	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0039677_36	Pfam	PF04448	NA	DUF551
UHGV-0039677_39	UniRef90	UniRef90_A0A8B3AJ48	AsnC family protein	NA
UHGV-0039677_39	Structural annotation	PF00196, TIGR04381, COG2771	NA	NA
UHGV-0039677_40	PHROG	phrog_38110	NA	unknown function
UHGV-0039677_41	PHROG	phrog_31991	NA	unknown function
UHGV-0039677_42	Structural annotation	PF08169, MF_01549, TIGR00405	NA	NA
UHGV-0039677_43	PHROG	phrog_7566	NA	unknown function
UHGV-0039677_43	eggNOG-mapper	411461.DORFOR_01145	NA	NA
UHGV-0039677_44	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0039677_44	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0039677_44	UniRef90	UniRef90_B0G4F7	ParB-like protein	NA
UHGV-0039677_44	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0039677_44	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0039677_44	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0039677_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0039677_44	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0039677_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0039677_45	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0039677_45	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0039677_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0039677_45	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0039677_46	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0039677_46	UniRef90	UniRef90_A0A1M6MV17	Ribonuclease HI	NA
UHGV-0039677_46	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0039677_46	COG	COG0328	Ribonuclease HI	NA
UHGV-0039677_46	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0039677_48	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0039677_48	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0039677_50	PHROG	phrog_36464	NA	unknown function
UHGV-0039677_50	eggNOG-mapper	411461.DORFOR_01136	NA	NA
UHGV-0039677_50	Structural annotation	PF09035	NA	NA
UHGV-0039677_59	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0039677_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039677_59	UniRef90	UniRef90_A0A413QMZ1	XRE family transcriptional regulator	NA
UHGV-0039677_59	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-0039677_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039677_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039677_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0039677_61	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0039677_61	UniRef90	UniRef90_B0G4E1	DNA-binding helix-turn-helix protein	NA
UHGV-0039677_61	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0039677_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039677_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0039677_62	eggNOG-mapper	411461.DORFOR_01127	NA	NA
UHGV-0039677_63	UniRef90	UniRef90_A0A413QN21	NA	NA
UHGV-0039677_63	eggNOG-mapper	411461.DORFOR_01127	NA	NA
UHGV-0039677_63	Pfam	PF16729	NA	DUF5067
UHGV-0039677_64	KOfam	K14059	int; integrase	NA
UHGV-0039677_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0039677_64	UniRef90	UniRef90_B0G4D9	Site-specific recombinase, phage integrase family	NA
UHGV-0039677_64	eggNOG-mapper	411461.DORFOR_01126	Phage integrase family	NA
UHGV-0039677_64	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0039677_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039677_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039677_64	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA