UHGV-0039747

Genome information

Genome length 30,819 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039747
vOTU ID	vOTU-074919
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_1_RAJ1011YZ__NODE_1391_length_30819_cov_8.066944
BioSample	SAMEA4969162
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.86
Jumbo phage	No

Genome content
Genome length	30,819 bps
GC content	49.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.12%
Average CDS length	561.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039747_1	PHROG	phrog_1066	NA	unknown function
UHGV-0039747_1	UniRef90	UniRef90_A0A7G5C3E9	P27 family phage terminase small subunit	NA
UHGV-0039747_1	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0039747_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0039747_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0039747_2	UniRef90	UniRef90_A0A1Y3R957	Terminase	NA
UHGV-0039747_2	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0039747_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0039747_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0039747_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0039747_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0039747_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0039747_3	UniRef90	UniRef90_A0A7X7AAU2	Phage portal protein	NA
UHGV-0039747_3	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-0039747_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0039747_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0039747_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0039747_4	KOfam	K06904	NA	NA
UHGV-0039747_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0039747_4	UniRef90	UniRef90_E6MGY2	Phage prohead protease, HK97 family	NA
UHGV-0039747_4	eggNOG-mapper	887929.HMP0721_1266	Caudovirus prohead serine protease	NA
UHGV-0039747_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0039747_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0039747_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0039747_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0039747_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0039747_5	UniRef90	UniRef90_UPI00040EA8CF	phage major capsid protein	NA
UHGV-0039747_5	eggNOG-mapper	1123263.AUKY01000046_gene469	Phage capsid family	NA
UHGV-0039747_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0039747_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0039747_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0039747_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0039747_6	PHROG	phrog_5223	neck protein	connector
UHGV-0039747_6	UniRef90	UniRef90_M1MA30	NA	NA
UHGV-0039747_6	eggNOG-mapper	931276.Cspa_c10180	NA	NA
UHGV-0039747_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0039747_6	Structural annotation	TIGR01560	NA	NA
UHGV-0039747_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0039747_7	UniRef90	UniRef90_UPI001959FB60	phage head closure protein	NA
UHGV-0039747_7	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-0039747_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0039747_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0039747_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0039747_8	UniRef90	UniRef90_A0A285G7N3	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0039747_8	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0039747_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0039747_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0039747_9	eggNOG-mapper	1280671.AUJH01000012_gene3145	NA	NA
UHGV-0039747_9	Structural annotation	PF05657	NA	NA
UHGV-0039747_10	PHROG	phrog_88	major tail protein	tail
UHGV-0039747_10	UniRef90	UniRef90_A0A7X6CWI9	Phage tail protein	NA
UHGV-0039747_10	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0039747_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0039747_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0039747_11	PHROG	phrog_709	NA	unknown function
UHGV-0039747_11	UniRef90	UniRef90_A0A0M0GAZ9	Prophage pi2 protein 40	NA
UHGV-0039747_11	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-0039747_11	Structural annotation	PF11836	NA	NA
UHGV-0039747_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0039747_12	UniRef90	UniRef90_A0A1Q9JFY8	Phage tail tape measure protein	NA
UHGV-0039747_12	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-0039747_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039747_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0039747_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0039747_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0039747_13	Structural annotation	PF20458, TIGR02241, COG3499	NA	NA
UHGV-0039747_16	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0039747_17	eggNOG-mapper	1410624.JNKK01000017_gene1988	NA	NA
UHGV-0039747_19	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0039747_19	UniRef90	UniRef90_A0A412ELA1	Helix-turn-helix domain-containing protein	NA
UHGV-0039747_19	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039747_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039747_19	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0039747_19	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0039747_20	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0039747_21	PHROG	phrog_1129	holin	lysis
UHGV-0039747_21	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0039747_21	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0039747_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0039747_21	Structural annotation	PF06946	NA	NA
UHGV-0039747_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0039747_22	PHROG	phrog_435	endolysin	lysis
UHGV-0039747_22	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039747_22	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039747_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0039747_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039747_22	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0039747_23	COG	COG5492	NA	NA
UHGV-0039747_23	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0039747_24	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0039747_25	PHROG	phrog_21718	NA	unknown function
UHGV-0039747_25	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0039747_27	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0039747_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0039747_30	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0039747_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039747_30	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0039747_31	KOfam	K14059	int; integrase	NA
UHGV-0039747_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0039747_31	UniRef90	UniRef90_A0A6N7X4W3	Site-specific integrase	NA
UHGV-0039747_31	eggNOG-mapper	742823.HMPREF9465_00188	Belongs to the 'phage' integrase family	NA
UHGV-0039747_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039747_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039747_31	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0039747_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0039747_32	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0039747_32	UniRef90	UniRef90_A0A1I0BDF7	Helix-turn-helix	NA
UHGV-0039747_32	eggNOG-mapper	1122173.AXVL01000018_gene460	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039747_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039747_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039747_32	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0039747_33	UniRef90	UniRef90_A0A8B4HXZ0	Prophage pi2 protein 05	NA
UHGV-0039747_33	eggNOG-mapper	646413.C5IUM3_9CAUD	NA	NA
UHGV-0039747_33	Pfam	PF05339	NA	DUF739
UHGV-0039747_33	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0039747_35	PHROG	phrog_6058	NA	unknown function
UHGV-0039747_35	UniRef90	UniRef90_R6E1Y4	Modification methylase SinI	NA
UHGV-0039747_35	eggNOG-mapper	1111454.HMPREF1250_0785	NA	NA
UHGV-0039747_35	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0039747_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0039747_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0039747_41	UniRef90	UniRef90_A0A3D5WJ48	Single-stranded DNA-binding protein	NA
UHGV-0039747_41	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-0039747_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0039747_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0039747_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0039747_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0039747_41	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0039747_42	PHROG	phrog_6969	NA	unknown function
UHGV-0039747_42	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0039747_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0039747_42	Structural annotation	PF01978, MF_01819, TIGR01610, COG1510	NA	NA
UHGV-0039747_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0039747_45	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0039747_45	UniRef90	UniRef90_A0A443J0C0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0039747_45	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-0039747_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0039747_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0039747_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0039747_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0039747_46	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0039747_48	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0039747_48	PHROG	phrog_25567	NA	unknown function
UHGV-0039747_48	UniRef90	UniRef90_C6LLH1	HTH cro/C1-type domain-containing protein	NA
UHGV-0039747_48	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0039747_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039747_48	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0039747_49	PHROG	phrog_21498	NA	unknown function
UHGV-0039747_49	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0039747_49	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-0039747_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0039747_49	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0039747_50	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0039747_50	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0039747_50	UniRef90	UniRef90_A0A351TQU6	HNH endonuclease	NA
UHGV-0039747_50	eggNOG-mapper	931626.Awo_c31080	HNH nucleases	NA
UHGV-0039747_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0039747_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0039747_50	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA