UHGV-0039780

Genome information

Genome length 25,911 bps

CDS count 28

Completeness 71.86% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039780
vOTU ID	vOTU-036333
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_12_1556__NODE_4533_length_25911_cov_10.538283
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.76
Jumbo phage	No

Genome content
Genome length	25,911 bps
GC content	35.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	92.75%
Average CDS length	862.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039780_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0039780_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039780_1	UniRef90	UniRef90_UPI00073F2BD4	NA	NA
UHGV-0039780_1	eggNOG-mapper	491915.Aflv_0659	HNH nucleases	NA
UHGV-0039780_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0039780_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0039780_3	UniRef90	UniRef90_A0A7X5E0X5	Terminase large subunit	NA
UHGV-0039780_3	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0039780_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0039780_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0039780_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0039780_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0039780_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0039780_4	UniRef90	UniRef90_A0A7T3K8R0	Phage portal protein	NA
UHGV-0039780_4	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0039780_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0039780_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0039780_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0039780_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0039780_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0039780_5	UniRef90	UniRef90_A0A7U4LNK5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0039780_5	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-0039780_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0039780_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0039780_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0039780_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0039780_6	UniRef90	UniRef90_A0A173W784	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0039780_6	eggNOG-mapper	864178.E2ELI5_9CAUD	peptidase activity	NA
UHGV-0039780_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0039780_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0039780_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0039780_7	PHROG	phrog_749	NA	unknown function
UHGV-0039780_7	UniRef90	UniRef90_A0A396SIZ8	Phage gp6-like head-tail connector protein	NA
UHGV-0039780_7	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0039780_9	eggNOG-mapper	663278.Ethha_1842	NA	NA
UHGV-0039780_11	PHROG	phrog_88	major tail protein	tail
UHGV-0039780_11	UniRef90	UniRef90_UPI0011DDC47F	phage tail protein	NA
UHGV-0039780_11	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0039780_11	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0039780_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0039780_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0039780_12	PHROG	phrog_11037	NA	unknown function
UHGV-0039780_12	UniRef90	UniRef90_A0A1T4LEQ5	SH3b domain-containing protein	NA
UHGV-0039780_12	eggNOG-mapper	1235796.C815_00900	NA	NA
UHGV-0039780_12	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0039780_13	PHROG	phrog_881	holin	lysis
UHGV-0039780_13	UniRef90	UniRef90_UPI0018A8FD4D	phage holin	NA
UHGV-0039780_13	eggNOG-mapper	1437603.BMON_0122	Putative phage holin Dp-1	NA
UHGV-0039780_13	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0039780_13	Structural annotation	PF16938	NA	NA
UHGV-0039780_16	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0039780_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0039780_16	UniRef90	UniRef90_A0A413QNB2	Phage tail tape measure protein	NA
UHGV-0039780_16	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0039780_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039780_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0039780_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0039780_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0039780_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0039780_17	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0039780_17	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0039780_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0039780_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0039780_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0039780_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0039780_18	UniRef90	UniRef90_A0A7G9G6Y3	Phage tail protein	NA
UHGV-0039780_18	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0039780_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0039780_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0039780_18	COG	COG4926	Phage-related protein	NA
UHGV-0039780_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0039780_19	PHROG	phrog_16381	NA	unknown function
UHGV-0039780_19	UniRef90	UniRef90_A0A374AP87	Ig-like domain-containing protein	NA
UHGV-0039780_19	eggNOG-mapper	176279.SERP1642	Phage minor structural protein	NA
UHGV-0039780_19	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0039780_20	PHROG	phrog_19556	tail fiber protein; host specificity	tail
UHGV-0039780_20	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-0039780_20	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0039780_21	PHROG	phrog_372	tail protein	tail
UHGV-0039780_21	UniRef90	UniRef90_UPI0011DE390F	NA	NA
UHGV-0039780_21	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA
UHGV-0039780_21	Pfam	PF05895	NA	DUF859
UHGV-0039780_21	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0039780_22	Structural annotation	PF10618	NA	NA
UHGV-0039780_23	Structural annotation	PF20787	NA	NA
UHGV-0039780_24	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0039780_27	Structural annotation	PF18573, NF033147	NA	NA