UHGV-0039818

Genome information

Genome length 38,297 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039818
vOTU ID	vOTU-077559
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_9
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.78
Jumbo phage	No

Genome content
Genome length	38,297 bps
GC content	33.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	94.12%
Average CDS length	550.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039818_2	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0039818_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0039818_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039818_4	UniRef90	UniRef90_UPI000E4199BF	helix-turn-helix domain-containing protein	NA
UHGV-0039818_4	eggNOG-mapper	908340.HMPREF9406_2608	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039818_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039818_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039818_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0039818_7	PHROG	phrog_2232	NA	unknown function
UHGV-0039818_7	UniRef90	UniRef90_UPI000E40888B	NA	NA
UHGV-0039818_7	eggNOG-mapper	888821.HMPREF9394_1621	NA	NA
UHGV-0039818_7	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0039818_7	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0039818_11	UniRef90	UniRef90_UPI000E3FCD94	lactate permease	NA
UHGV-0039818_11	eggNOG-mapper	1118063.I7J6R8_9CAUD	NA	NA
UHGV-0039818_11	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-0039818_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0039818_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0039818_14	eggNOG-mapper	999413.HMPREF1094_02028	NA	NA
UHGV-0039818_14	Structural annotation	PF21578	NA	NA
UHGV-0039818_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0039818_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0039818_15	UniRef90	UniRef90_UPI000E3F9CA4	tyrosine-type recombinase/integrase	NA
UHGV-0039818_15	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0039818_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039818_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0039818_15	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0039818_16	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0039818_17	PHROG	phrog_7445	NA	unknown function
UHGV-0039818_17	UniRef90	UniRef90_UPI000E422ACB	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0039818_17	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA
UHGV-0039818_17	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0039818_17	Structural annotation	PF14058	NA	NA
UHGV-0039818_18	PHROG	phrog_8470	NA	unknown function
UHGV-0039818_18	UniRef90	UniRef90_UPI000E41BEA4	PcfJ domain-containing protein	NA
UHGV-0039818_18	eggNOG-mapper	1211844.CBLM010000016_gene1507	PcfJ-like protein	NA
UHGV-0039818_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0039818_18	Structural annotation	PF14284	NA	NA
UHGV-0039818_19	KOfam	K24451	zim; modification methylase	NA
UHGV-0039818_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0039818_19	UniRef90	UniRef90_UPI000E3FEB77	site-specific DNA-methyltransferase	NA
UHGV-0039818_19	eggNOG-mapper	999413.HMPREF1094_02026	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0039818_19	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0039818_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0039818_19	COG	COG0863	DNA modification methylase	NA
UHGV-0039818_19	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0039818_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0039818_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0039818_20	UniRef90	UniRef90_UPI000E3FB8CD	DEAD/DEAH box helicase	NA
UHGV-0039818_20	eggNOG-mapper	908340.HMPREF9406_2595	SNF2 family N-terminal domain	NA
UHGV-0039818_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0039818_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0039818_20	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0039818_21	PHROG	phrog_5781	NA	unknown function
UHGV-0039818_21	UniRef90	UniRef90_UPI000E41BACA	NA	NA
UHGV-0039818_21	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0039818_21	Pfam	PF14359	NA	DUF4406
UHGV-0039818_21	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0039818_21	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0039818_24	UniRef90	UniRef90_UPI000E415899	NA	NA
UHGV-0039818_24	Pfam	PF12961	NA	DUF3850
UHGV-0039818_31	PHROG	phrog_2776	NA	unknown function
UHGV-0039818_31	UniRef90	UniRef90_A0A8G1GGN1	Endonuclease	NA
UHGV-0039818_31	eggNOG-mapper	349161.Dred_0923	NA	NA
UHGV-0039818_33	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0039818_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039818_34	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0039818_34	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0039818_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0039818_35	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0039818_35	UniRef90	UniRef90_UPI000E41E610	P27 family phage terminase small subunit	NA
UHGV-0039818_35	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-0039818_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0039818_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0039818_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0039818_36	UniRef90	UniRef90_UPI001F1BD989	terminase large subunit	NA
UHGV-0039818_36	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0039818_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0039818_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0039818_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0039818_36	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0039818_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0039818_37	UniRef90	UniRef90_UPI000E3FF410	phage portal protein	NA
UHGV-0039818_37	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0039818_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0039818_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0039818_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0039818_37	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0039818_38	KOfam	K06904	NA	NA
UHGV-0039818_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0039818_38	UniRef90	UniRef90_UPI000E423EDB	HK97 family phage prohead protease	NA
UHGV-0039818_38	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0039818_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0039818_38	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0039818_38	COG	COG3740	Phage head maturation protease	NA
UHGV-0039818_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0039818_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0039818_39	UniRef90	UniRef90_UPI000E3FAE4F	phage major capsid protein	NA
UHGV-0039818_39	eggNOG-mapper	908340.HMPREF9406_2577	phage major capsid protein, HK97 family	NA
UHGV-0039818_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0039818_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0039818_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0039818_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0039818_40	PHROG	phrog_2550	NA	unknown function
UHGV-0039818_40	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0039818_40	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0039818_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0039818_41	PHROG	phrog_19734	NA	unknown function
UHGV-0039818_41	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0039818_41	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0039818_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0039818_42	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0039818_42	Structural annotation	PF05657	NA	NA
UHGV-0039818_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0039818_43	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0039818_43	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0039818_43	Structural annotation	TIGR01725	NA	NA
UHGV-0039818_44	PHROG	phrog_88	major tail protein	tail
UHGV-0039818_44	UniRef90	UniRef90_UPI000E421B0C	phage tail protein	NA
UHGV-0039818_44	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0039818_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0039818_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0039818_45	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0039818_47	PHROG	phrog_23464	NA	unknown function
UHGV-0039818_47	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0039818_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0039818_47	Structural annotation	COG5280	NA	NA
UHGV-0039818_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0039818_48	UniRef90	UniRef90_UPI000E40AB46	phage tail protein	NA
UHGV-0039818_48	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0039818_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0039818_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0039818_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0039818_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0039818_49	UniRef90	UniRef90_UPI000E417F59	phage tail protein	NA
UHGV-0039818_49	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0039818_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0039818_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0039818_49	COG	COG4926	Phage-related protein	NA
UHGV-0039818_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0039818_50	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0039818_50	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0039818_50	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0039818_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0039818_51	PHROG	phrog_16164	NA	unknown function
UHGV-0039818_51	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0039818_51	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0039818_52	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0039818_52	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0039818_52	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0039818_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0039818_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0039818_53	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0039818_53	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0039818_53	eggNOG-mapper	1280689.AUJC01000011_gene1534	Collagen triple helix repeat (20 copies)	NA
UHGV-0039818_53	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0039818_53	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0039818_60	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0039818_60	eggNOG-mapper	908340.HMPREF9406_2566	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0039818_60	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0039818_60	Structural annotation	NF012201	NA	NA
UHGV-0039818_61	PHROG	phrog_443	holin	lysis
UHGV-0039818_61	UniRef90	UniRef90_UPI000E3FE0A2	holin	NA
UHGV-0039818_61	eggNOG-mapper	1211844.CBLM010000023_gene976	Putative lactococcus lactis phage r1t holin	NA
UHGV-0039818_61	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0039818_61	Structural annotation	PF16945	NA	NA
UHGV-0039818_62	PHROG	phrog_4105	NA	unknown function
UHGV-0039818_62	eggNOG-mapper	768486.EHR_00560	NA	NA
UHGV-0039818_63	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0039818_63	PHROG	phrog_435	endolysin	lysis
UHGV-0039818_63	UniRef90	UniRef90_UPI000E421BBF	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039818_63	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039818_63	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0039818_63	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0039818_63	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0039818_64	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0039818_64	UniRef90	UniRef90_UPI000E403251	helix-turn-helix transcriptional regulator	NA
UHGV-0039818_64	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0039818_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0039818_64	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0039818_64	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0039818_66	KOfam	K14059	int; integrase	NA
UHGV-0039818_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0039818_66	UniRef90	UniRef90_UPI000E408445	site-specific integrase	NA
UHGV-0039818_66	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0039818_66	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0039818_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0039818_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039818_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039818_66	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4973	NA	NA