UHGV-0039888

Genome information

Genome length 41,345 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039888
vOTU ID	vOTU-004800
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_17_RAU1014YZ__NODE_1133_length_41422_cov_15.288354
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	99.4
Jumbo phage	No

Genome content
Genome length	41,345 bps
GC content	41.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.88%
Average CDS length	779.51 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039888_3	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0039888_3	PHROG	phrog_3513	endolysin	lysis
UHGV-0039888_3	UniRef90	UniRef90_E4LA87	Putative muramidase-2	NA
UHGV-0039888_3	eggNOG-mapper	910314.HMPREF9220_0717	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0039888_3	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0039888_3	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0039888_3	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0039888_5	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0039888_5	UniRef90	UniRef90_A0A3A6W2V7	DNA maturase B	NA
UHGV-0039888_5	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0039888_5	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0039888_5	COG	COG5410	NA	NA
UHGV-0039888_5	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-0039888_5	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0039888_6	Structural annotation	PF03895	NA	NA
UHGV-0039888_7	KOfam	K14059	int; integrase	NA
UHGV-0039888_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0039888_7	UniRef90	UniRef90_A0A1M6KED8	Site-specific recombinase XerD	NA
UHGV-0039888_7	eggNOG-mapper	910314.HMPREF9220_0756	Belongs to the 'phage' integrase family	NA
UHGV-0039888_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0039888_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039888_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039888_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0039888_9	PHROG	phrog_5149	NA	unknown function
UHGV-0039888_15	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-0039888_15	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0039888_15	UniRef90	UniRef90_A0A1M6MEA8	DNA-directed RNA polymerase	NA
UHGV-0039888_15	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0039888_15	Pfam	PF14700	DNA-directed RNA polymerase N-terminal	RPOL_N
UHGV-0039888_15	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-0039888_15	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0039888_15	Structural annotation	PF00940, PF14700, NF011539, COG5108	NA	NA
UHGV-0039888_16	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0039888_16	COG	COG3905	Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain	NA
UHGV-0039888_16	Structural annotation	PF19839, NF010256, COG4710	NA	NA
UHGV-0039888_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0039888_19	UniRef90	UniRef90_A0A7V1H787	DNA cytosine methyltransferase	NA
UHGV-0039888_19	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0039888_19	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0039888_20	PHROG	phrog_236	nucleotide kinase	other
UHGV-0039888_20	UniRef90	UniRef90_A0A1M6MEK4	NA	NA
UHGV-0039888_20	eggNOG-mapper	910314.HMPREF9220_0742	NA	NA
UHGV-0039888_20	Pfam	PF11753	NA	DUF3310
UHGV-0039888_21	PHROG	phrog_6721	NA	unknown function
UHGV-0039888_21	eggNOG-mapper	706433.HMPREF9430_00436	NA	NA
UHGV-0039888_21	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-0039888_23	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-0039888_23	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0039888_23	UniRef90	UniRef90_A0A3A6W7M3	NA	NA
UHGV-0039888_23	eggNOG-mapper	500635.MITSMUL_03081	NA	NA
UHGV-0039888_23	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-0039888_23	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0039888_24	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-0039888_24	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0039888_24	UniRef90	UniRef90_UPI0010328C79	endonuclease I	NA
UHGV-0039888_24	eggNOG-mapper	913183.E5RV06_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-0039888_24	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-0039888_24	Structural annotation	PF05367, COG1787	NA	NA
UHGV-0039888_25	eggNOG-mapper	1527506.A0A088FBW1_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0039888_26	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-0039888_26	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0039888_26	UniRef90	UniRef90_A0A1M6MES9	Twinkle protein	NA
UHGV-0039888_26	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-0039888_26	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-0039888_26	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0039888_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0039888_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-0039888_26	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-0039888_26	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-0039888_27	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0039888_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0039888_27	UniRef90	UniRef90_A0A1M6MFE6	DNA-directed DNA polymerase	NA
UHGV-0039888_27	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0039888_27	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-0039888_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0039888_27	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0039888_27	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-0039888_30	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0039888_30	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0039888_30	UniRef90	UniRef90_A0A1M6MG40	DNA polymerase-1	NA
UHGV-0039888_30	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-0039888_30	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0039888_30	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0039888_30	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-0039888_33	Pfam	PF11653	Bacteriophage T7 virion assembly protein	VirionAssem_T7
UHGV-0039888_34	PHROG	phrog_449	head-tail adaptor	connector
UHGV-0039888_34	UniRef90	UniRef90_A0A1M6MG79	Bacteriophage head to tail connecting protein	NA
UHGV-0039888_34	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-0039888_34	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0039888_34	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0039888_35	PHROG	phrog_1052	head assembly	head and packaging
UHGV-0039888_35	UniRef90	UniRef90_A0A1M6MGQ8	Phage T7 capsid assembly protein	NA
UHGV-0039888_35	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-0039888_35	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-0039888_35	Structural annotation	PF05396	NA	NA
UHGV-0039888_36	PHROG	phrog_267	major head protein	head and packaging
UHGV-0039888_36	UniRef90	UniRef90_UPI001032B69C	phage capsid protein	NA
UHGV-0039888_36	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0039888_36	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-0039888_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0039888_38	PHROG	phrog_446	tail protein	tail
UHGV-0039888_38	UniRef90	UniRef90_UPI0015593CFE	phage tail protein	NA
UHGV-0039888_38	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-0039888_38	Pfam	PF17212	Tail tubular protein	Tube
UHGV-0039888_38	Structural annotation	PF17212	NA	NA
UHGV-0039888_39	PHROG	phrog_457	tail protein	tail
UHGV-0039888_39	UniRef90	UniRef90_A0A2Z2U7S2	Putative tail tubular protein B	NA
UHGV-0039888_39	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-0039888_39	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0039888_40	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0039888_40	eggNOG-mapper	1122963.AUHB01000020_gene2269	NA	NA
UHGV-0039888_40	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0039888_40	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0039888_41	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-0039888_41	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-0039888_41	Structural annotation	PF10774	NA	NA
UHGV-0039888_42	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-0039888_42	Structural annotation	MF_04122	NA	NA
UHGV-0039888_43	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-0039888_43	UniRef90	UniRef90_A0A1M6MGY6	Phage_lysozyme2 domain-containing protein	NA
UHGV-0039888_43	eggNOG-mapper	910314.HMPREF9220_0721	NA	NA
UHGV-0039888_43	Structural annotation	MF_04121, NF038016, COG1705	NA	NA
UHGV-0039888_44	PHROG	phrog_6256	tail fiber protein	tail
UHGV-0039888_44	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-0039888_44	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0039888_46	Structural annotation	NF033819	NA	NA
UHGV-0039888_48	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA