UHGV-0039943

Genome information

Genome length 43,879 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9669

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039943
vOTU ID	vOTU-013513
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1946
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9669
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.6
Jumbo phage	No

Genome content
Genome length	43,879 bps
GC content	43.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.38%
Average CDS length	615.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039943_1	KOfam	K14059	int; integrase	NA
UHGV-0039943_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0039943_1	UniRef90	UniRef90_A0A380K7Q3	Mobile element protein	NA
UHGV-0039943_1	eggNOG-mapper	445973.CLOBAR_01086	Belongs to the 'phage' integrase family	NA
UHGV-0039943_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0039943_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039943_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039943_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0039943_2	UniRef90	UniRef90_UPI001CDA071D	H-type lectin domain-containing protein	NA
UHGV-0039943_2	COG	COG4372	NA	NA
UHGV-0039943_3	UniRef90	UniRef90_UPI001CDA071D	H-type lectin domain-containing protein	NA
UHGV-0039943_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0039943_5	PHROG	phrog_38707	NA	unknown function
UHGV-0039943_5	UniRef90	UniRef90_UPI00082EFB7A	tail fiber protein	NA
UHGV-0039943_5	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0039943_5	COG	COG4675	Phage tail collar domain	NA
UHGV-0039943_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0039943_6	UniRef90	UniRef90_A0A1M6HSX0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0039943_6	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0039943_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0039943_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0039943_7	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-0039943_7	eggNOG-mapper	33035.JPJF01000033_gene2263	NA	NA
UHGV-0039943_7	Structural annotation	PF21567	NA	NA
UHGV-0039943_8	PHROG	phrog_36410	NA	unknown function
UHGV-0039943_8	UniRef90	UniRef90_A0A7G5MSS0	Phage tail family protein	NA
UHGV-0039943_8	eggNOG-mapper	33035.JPJF01000033_gene2264	PFAM Phage tail protein	NA
UHGV-0039943_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0039943_8	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0039943_9	PHROG	phrog_19074	NA	unknown function
UHGV-0039943_9	UniRef90	UniRef90_A0A8G1WUI8	Phage tail tape measure protein	NA
UHGV-0039943_9	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0039943_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039943_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0039943_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0039943_9	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0039943_10	PHROG	phrog_706	NA	unknown function
UHGV-0039943_10	UniRef90	UniRef90_UPI001319ED1D	Gp15 family bacteriophage protein	NA
UHGV-0039943_10	eggNOG-mapper	33035.JPJF01000033_gene2266	COG NOG24969 non supervised orthologous group	NA
UHGV-0039943_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0039943_10	Structural annotation	PF06854	NA	NA
UHGV-0039943_11	PHROG	phrog_4450	NA	unknown function
UHGV-0039943_11	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0039943_11	Pfam	PF20378	NA	DUF6673
UHGV-0039943_12	PHROG	phrog_3099	NA	unknown function
UHGV-0039943_12	eggNOG-mapper	33035.JPJF01000033_gene2268	NA	NA
UHGV-0039943_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0039943_13	PHROG	phrog_3266	tail completion	connector
UHGV-0039943_13	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0039943_13	eggNOG-mapper	33035.JPJF01000033_gene2269	NA	NA
UHGV-0039943_13	Structural annotation	PF12691	NA	NA
UHGV-0039943_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0039943_14	UniRef90	UniRef90_A0A8G1TFG5	Capsid protein	NA
UHGV-0039943_14	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0039943_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0039943_14	Structural annotation	PF11114	NA	NA
UHGV-0039943_15	PHROG	phrog_3366	NA	unknown function
UHGV-0039943_15	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0039943_15	Pfam	PF20536	NA	DUF6751
UHGV-0039943_15	Structural annotation	PF20536	NA	NA
UHGV-0039943_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0039943_16	eggNOG-mapper	33035.JPJF01000033_gene2271	NA	NA
UHGV-0039943_17	UniRef90	UniRef90_A0A8G1TFU0	S-l_SbsC_C domain-containing protein	NA
UHGV-0039943_17	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0039943_17	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0039943_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0039943_17	Structural annotation	PF18316	NA	NA
UHGV-0039943_18	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0039943_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0039943_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0039943_19	UniRef90	UniRef90_UPI001319F292	phage scaffolding protein	NA
UHGV-0039943_19	eggNOG-mapper	33035.JPJF01000030_gene2293	PFAM Phage minor structural	NA
UHGV-0039943_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0039943_20	KOfam	K07584	NA	NA
UHGV-0039943_20	PHROG	phrog_4478	peptidase	other
UHGV-0039943_20	UniRef90	UniRef90_A0A8G1TI54	Ribosomal-processing cysteine protease Prp	NA
UHGV-0039943_20	eggNOG-mapper	33035.JPJF01000030_gene2292	Cysteine protease Prp	NA
UHGV-0039943_20	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0039943_20	COG	COG2868	NA	NA
UHGV-0039943_20	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0039943_21	Structural annotation	PF11344	NA	NA
UHGV-0039943_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0039943_22	UniRef90	UniRef90_UPI001CD92893	phage minor capsid protein	NA
UHGV-0039943_22	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-0039943_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0039943_22	COG	COG2369	NA	NA
UHGV-0039943_22	Structural annotation	PF06152, COG2369	NA	NA
UHGV-0039943_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0039943_23	UniRef90	UniRef90_A0A8G1WUI4	Phage capsid protein	NA
UHGV-0039943_23	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-0039943_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0039943_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0039943_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0039943_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0039943_24	UniRef90	UniRef90_A0A7G5MSQ6	PBSX family phage terminase large subunit	NA
UHGV-0039943_24	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0039943_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0039943_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0039943_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0039943_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0039943_25	PHROG	phrog_2412	NA	unknown function
UHGV-0039943_25	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0039943_26	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0039943_26	UniRef90	UniRef90_A0A8G1WUJ3	XRE family transcriptional regulator	NA
UHGV-0039943_26	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039943_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039943_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0039943_27	eggNOG-mapper	931276.Cspa_c09920	NA	NA
UHGV-0039943_28	UniRef90	UniRef90_UPI000834E818	NA	NA
UHGV-0039943_28	eggNOG-mapper	931276.Cspa_c09910	NA	NA
UHGV-0039943_28	Structural annotation	PF15931, MF_00194, NF001460, COG2974	NA	NA
UHGV-0039943_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0039943_29	UniRef90	UniRef90_A0A8G1TK04	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0039943_29	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0039943_29	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0039943_29	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0039943_31	PHROG	phrog_19011	NA	unknown function
UHGV-0039943_31	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0039943_32	PHROG	phrog_17690	NA	unknown function
UHGV-0039943_32	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0039943_33	PHROG	phrog_37916	NA	unknown function
UHGV-0039943_38	Structural annotation	PF17399	NA	NA
UHGV-0039943_39	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0039943_39	UniRef90	UniRef90_A0A8G1WT09	MazG domain-containing protein	NA
UHGV-0039943_39	eggNOG-mapper	1345695.CLSA_c30110	NA	NA
UHGV-0039943_39	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0039943_39	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0039943_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0039943_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0039943_40	UniRef90	UniRef90_A0A8G1WUI9	IstB_IS21 domain-containing protein	NA
UHGV-0039943_40	eggNOG-mapper	33035.JPJF01000142_gene3609	DNA-dependent DNA replication	NA
UHGV-0039943_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0039943_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0039943_40	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0039943_41	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0039943_41	UniRef90	UniRef90_A0A8G1WYL1	Phg_2220_C domain-containing protein	NA
UHGV-0039943_41	eggNOG-mapper	33035.JPJF01000135_gene5078	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0039943_41	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0039943_41	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0039943_41	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0039943_41	Structural annotation	TIGR01610	NA	NA
UHGV-0039943_42	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0039943_42	UniRef90	UniRef90_A0A136Q8L7	Putative holliday junction resolvase Hjc (Fragment)	NA
UHGV-0039943_42	eggNOG-mapper	33035.JPJF01000135_gene5079	NA	NA
UHGV-0039943_42	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0039943_44	PHROG	phrog_398	NA	unknown function
UHGV-0039943_44	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0039943_44	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0039943_44	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0039943_44	Structural annotation	PF16784	NA	NA
UHGV-0039943_45	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0039943_45	UniRef90	UniRef90_A0A8G1WU89	NA	NA
UHGV-0039943_45	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0039943_45	Pfam	PF06378	NA	DUF1071
UHGV-0039943_45	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0039943_46	PHROG	phrog_30234	NA	unknown function
UHGV-0039943_46	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0039943_51	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0039943_51	PHROG	phrog_200	lipoprotein	other
UHGV-0039943_51	UniRef90	UniRef90_A0A8G1THJ2	Prohibitin family protein	NA
UHGV-0039943_51	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-0039943_51	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0039943_51	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0039943_51	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0039943_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039943_57	UniRef90	UniRef90_A0A8G1TI02	XRE family transcriptional regulator	NA
UHGV-0039943_57	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0039943_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039943_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0039943_58	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0039943_58	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0039943_58	UniRef90	UniRef90_A0A8G1TI46	Helix-turn-helix domain-containing protein	NA
UHGV-0039943_58	eggNOG-mapper	1235792.C808_03098	Peptidase S24-like	NA
UHGV-0039943_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039943_58	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0039943_58	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0039943_58	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0039943_59	PHROG	phrog_7823	NA	unknown function
UHGV-0039943_59	eggNOG-mapper	33035.JPJF01000158_gene3562	NA	NA
UHGV-0039943_63	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0039943_63	UniRef90	UniRef90_UPI001D0F1B18	Ltp family lipoprotein	NA
UHGV-0039943_63	eggNOG-mapper	33035.JPJF01000109_gene437	Host cell surface-exposed lipoprotein	NA
UHGV-0039943_63	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0039943_63	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0039943_64	Structural annotation	PF12869, PF01336, NF012035, COG4085	NA	NA
UHGV-0039943_65	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0039943_65	PHROG	phrog_95	integrase	integration and excision
UHGV-0039943_65	UniRef90	UniRef90_UPI0015E169A5	recombinase family protein	NA
UHGV-0039943_65	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0039943_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0039943_65	Pfam	PF07508	Recombinase	Recombinase
UHGV-0039943_65	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0039943_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0039943_65	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA