UHGV-0039966

Genome information

Genome length 39,727 bps

CDS count 58

Completeness 99.02% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0039966
vOTU ID	vOTU-013150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1580
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30
Jumbo phage	No

Genome content
Genome length	39,727 bps
GC content	62.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.35%
Average CDS length	641.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039966_1	KOfam	K14059	int; integrase	NA
UHGV-0039966_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0039966_1	UniRef90	UniRef90_A0A1X2Z8V5	Phage integrase family protein	NA
UHGV-0039966_1	eggNOG-mapper	1680.BADO_1276	Phage integrase family	NA
UHGV-0039966_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0039966_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0039966_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0039966_1	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0039966_2	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0039966_3	UniRef90	UniRef90_A0A415BYT0	HTH cro/C1-type domain-containing protein	NA
UHGV-0039966_3	eggNOG-mapper	1437610.BREU_1423	NA	NA
UHGV-0039966_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0039966_4	UniRef90	UniRef90_UPI00123A2191	helix-turn-helix transcriptional regulator	NA
UHGV-0039966_4	Structural annotation	PF08667, NF010465, COG3655	NA	NA
UHGV-0039966_5	UniRef90	UniRef90_A0A415BYU2	DNA-binding protein	NA
UHGV-0039966_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0039966_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0039966_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0039966_9	UniRef90	UniRef90_A0A1E7XZ38	Single-stranded DNA-binding protein	NA
UHGV-0039966_9	eggNOG-mapper	1435051.BMOU_0255	single-stranded DNA-binding protein	NA
UHGV-0039966_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0039966_9	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0039966_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0039966_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0039966_9	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0039966_10	eggNOG-mapper	1435051.BMOU_0254	NA	NA
UHGV-0039966_11	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0039966_11	UniRef90	UniRef90_A0A086ZNU5	Zinc finger protein	NA
UHGV-0039966_11	eggNOG-mapper	401473.BDP_0914	Helix-turn-helix domain	NA
UHGV-0039966_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0039966_12	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0039966_12	UniRef90	UniRef90_A0A415BYT5	ParB/RepB/Spo0J family partition protein	NA
UHGV-0039966_12	eggNOG-mapper	1435051.BMOU_0252	ParB-like nuclease domain	NA
UHGV-0039966_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0039966_12	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0039966_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0039966_12	Structural annotation	PF02195, PF08535, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0039966_13	Structural annotation	PF02185, NF012003	NA	NA
UHGV-0039966_14	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0039966_14	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0039966_14	UniRef90	UniRef90_A0A6N2U0W7	Oligoribonuclease	NA
UHGV-0039966_14	eggNOG-mapper	1435051.BMOU_0248	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0039966_14	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0039966_14	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0039966_17	PHROG	phrog_3641	NA	unknown function
UHGV-0039966_17	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0039966_19	eggNOG-mapper	1680.BADO_1257	NA	NA
UHGV-0039966_19	Structural annotation	PF19885, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0039966_21	PHROG	phrog_774	NA	unknown function
UHGV-0039966_21	UniRef90	UniRef90_A0A087DRP7	NA	NA
UHGV-0039966_21	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0039966_21	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0039966_23	Structural annotation	PF06013, MF_00683, NF035934	NA	NA
UHGV-0039966_24	PHROG	phrog_908	NA	unknown function
UHGV-0039966_24	UniRef90	UniRef90_A0A086ZNV6	PhnA protein	NA
UHGV-0039966_24	eggNOG-mapper	1435051.BMOU_0239	NA	NA
UHGV-0039966_26	PHROG	phrog_226	minor tail protein	tail
UHGV-0039966_26	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0039966_27	PHROG	phrog_8680	NA	unknown function
UHGV-0039966_27	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-0039966_27	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0039966_27	Pfam	PF14386	NA	DUF4417
UHGV-0039966_27	Structural annotation	PF14386	NA	NA
UHGV-0039966_29	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0039966_29	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0039966_29	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0039966_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0039966_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0039966_30	PHROG	phrog_104	portal protein	head and packaging
UHGV-0039966_30	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0039966_30	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0039966_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0039966_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0039966_31	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0039966_31	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0039966_32	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0039966_32	UniRef90	UniRef90_A0A7L6B7M9	NA	NA
UHGV-0039966_32	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0039966_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-0039966_33	UniRef90	UniRef90_A0A430FUD7	Phage capsid protein	NA
UHGV-0039966_33	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0039966_33	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0039966_34	PHROG	phrog_15682	NA	unknown function
UHGV-0039966_34	eggNOG-mapper	1117108.PAALTS15_13557	NA	NA
UHGV-0039966_35	UniRef90	UniRef90_A0A415BYV4	Head protein	NA
UHGV-0039966_36	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0039966_36	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0039966_36	eggNOG-mapper	1172180.KB911804_gene1130	NA	NA
UHGV-0039966_36	Pfam	PF09355	NA	Phage_Gp19
UHGV-0039966_36	Structural annotation	PF09355	NA	NA
UHGV-0039966_37	PHROG	phrog_13779	NA	unknown function
UHGV-0039966_37	UniRef90	UniRef90_A0A1X2YXX1	Phage associated protein	NA
UHGV-0039966_37	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0039966_37	Pfam	PF19586	NA	DUF6093
UHGV-0039966_37	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0039966_38	PHROG	phrog_19109	NA	unknown function
UHGV-0039966_38	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0039966_38	Structural annotation	TIGR01725	NA	NA
UHGV-0039966_39	UniRef90	UniRef90_A0A087DRR4	Transcriptional regulator	NA
UHGV-0039966_39	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0039966_39	Structural annotation	PF06141	NA	NA
UHGV-0039966_40	PHROG	phrog_2491	major tail protein	tail
UHGV-0039966_40	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0039966_40	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0039966_40	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0039966_41	UniRef90	UniRef90_A0A087DRR6	DNAase primase	NA
UHGV-0039966_41	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0039966_41	Structural annotation	PF08890	NA	NA
UHGV-0039966_42	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0039966_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0039966_43	UniRef90	UniRef90_A0A087DRR8	Phage tail tape measure protein, TP901 family	NA
UHGV-0039966_43	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0039966_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039966_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0039966_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0039966_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0039966_44	PHROG	phrog_5577	minor tail protein	tail
UHGV-0039966_44	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0039966_44	eggNOG-mapper	1435051.BMOU_0767	NA	NA
UHGV-0039966_44	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0039966_45	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0039966_45	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0039966_45	eggNOG-mapper	1692.BMAGN_1457	NA	NA
UHGV-0039966_45	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0039966_46	PHROG	phrog_1885	minor tail protein	tail
UHGV-0039966_46	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0039966_46	eggNOG-mapper	1688.BCUN_1860	NA	NA
UHGV-0039966_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0039966_47	PHROG	phrog_1885	minor tail protein	tail
UHGV-0039966_47	eggNOG-mapper	1688.BCUN_1859	domain, Protein	NA
UHGV-0039966_47	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0039966_48	eggNOG-mapper	78346.BRUM_0384	NA	NA
UHGV-0039966_50	PHROG	phrog_28754	NA	unknown function
UHGV-0039966_50	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0039966_50	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0039966_50	Structural annotation	PF18079	NA	NA
UHGV-0039966_51	PHROG	phrog_17147	NA	unknown function
UHGV-0039966_51	UniRef90	UniRef90_A0A0M4N1P7	Unassigned protein	NA
UHGV-0039966_51	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0039966_51	Structural annotation	PF21430	NA	NA
UHGV-0039966_53	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0039966_53	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0039966_53	UniRef90	UniRef90_A0A076JHX1	Retron-type reverse transcriptase	NA
UHGV-0039966_53	eggNOG-mapper	1680.BADO_1221	reverse transcriptase	NA
UHGV-0039966_53	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0039966_53	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0039966_53	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0039966_53	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0039966_55	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0039966_56	PHROG	phrog_1397	NA	unknown function
UHGV-0039966_56	UniRef90	UniRef90_A0A0G9M8G9	PRTRC system protein E	NA
UHGV-0039966_56	eggNOG-mapper	1680.BADO_1218	NA	NA
UHGV-0039966_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0039966_57	PHROG	phrog_291	endolysin	lysis
UHGV-0039966_57	UniRef90	UniRef90_A0A087D509	Glycosyl hydrolase family 25	NA
UHGV-0039966_57	eggNOG-mapper	78346.BRUM_0377	Glycosyl hydrolases family 25	NA
UHGV-0039966_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0039966_57	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0039966_57	Pfam	PF01476	LysM domain	LysM
UHGV-0039966_57	COG	COG1388	LysM repeat	NA
UHGV-0039966_57	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0039966_58	PHROG	phrog_881	holin	lysis
UHGV-0039966_58	UniRef90	UniRef90_A0A415BYZ9	Holin	NA
UHGV-0039966_58	eggNOG-mapper	78345.BMERY_0861	Putative phage holin Dp-1	NA
UHGV-0039966_58	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0039966_58	Structural annotation	PF16938	NA	NA