UHGV-0040197

Genome information

Genome length 32,422 bps

CDS count 48

Completeness 90.33% (high-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040197
vOTU ID	vOTU-080242
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1053
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.49
Jumbo phage	No

Genome content
Genome length	32,422 bps
GC content	37.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.04%
Average CDS length	633.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040197_1	PHROG	phrog_10054	NA	unknown function
UHGV-0040197_1	UniRef90	UniRef90_UPI001EE93FAF	phage baseplate upper protein	NA
UHGV-0040197_1	eggNOG-mapper	1104325.M7W_1369	InterPro IPR018913 Domain of	NA
UHGV-0040197_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0040197_2	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0040197_2	UniRef90	UniRef90_J7CX12	BppU_N domain-containing protein	NA
UHGV-0040197_2	eggNOG-mapper	565664.EFXG_01759	NA	NA
UHGV-0040197_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0040197_3	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0040197_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0040197_3	UniRef90	UniRef90_A0A6N3FL01	Murein DD-endopeptidase MepM	NA
UHGV-0040197_3	eggNOG-mapper	1158604.I591_00538	Prophage endopeptidase tail	NA
UHGV-0040197_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0040197_3	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0040197_3	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0040197_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0040197_3	COG	COG4926	Phage-related protein	NA
UHGV-0040197_3	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0040197_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0040197_4	UniRef90	UniRef90_A0A6N3FLH6	Phage tail protein	NA
UHGV-0040197_4	eggNOG-mapper	1158604.I591_00537	phage tail	NA
UHGV-0040197_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0040197_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0040197_5	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0040197_5	UniRef90	UniRef90_A0A1A6Z382	Phage tail tape measure protein	NA
UHGV-0040197_5	eggNOG-mapper	1158604.I591_00536	Phage-related minor tail protein	NA
UHGV-0040197_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0040197_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0040197_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0040197_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0040197_6	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0040197_6	UniRef90	UniRef90_W7D9N8	NA	NA
UHGV-0040197_6	eggNOG-mapper	565664.EFXG_02653	NA	NA
UHGV-0040197_7	PHROG	phrog_11502	tail protein	tail
UHGV-0040197_7	UniRef90	UniRef90_A0A366U749	Phage major tail protein	NA
UHGV-0040197_7	eggNOG-mapper	1158614.I592_02328	NA	NA
UHGV-0040197_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0040197_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0040197_8	UniRef90	UniRef90_UPI0013EA43CF	HK97 gp10 family phage protein	NA
UHGV-0040197_8	eggNOG-mapper	565664.EFXG_02655	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0040197_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0040197_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0040197_8	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0040197_9	PHROG	phrog_78	tail terminator	connector
UHGV-0040197_9	UniRef90	UniRef90_A0A366U5N9	NA	NA
UHGV-0040197_9	eggNOG-mapper	565664.EFXG_02656	NA	NA
UHGV-0040197_9	Structural annotation	PF20765	NA	NA
UHGV-0040197_10	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0040197_10	UniRef90	UniRef90_A0A2K8TFW3	Phage head-tail joining protein	NA
UHGV-0040197_10	eggNOG-mapper	1158604.I591_00531	Phage head-tail joining protein	NA
UHGV-0040197_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0040197_10	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0040197_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0040197_11	PHROG	phrog_4609	NA	unknown function
UHGV-0040197_11	UniRef90	UniRef90_A0A1S8KT60	Phage gp6-like head-tail connector protein	NA
UHGV-0040197_11	eggNOG-mapper	1158604.I591_00530	Phage gp6-like head-tail connector protein	NA
UHGV-0040197_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0040197_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0040197_12	PHROG	phrog_37336	NA	unknown function
UHGV-0040197_12	UniRef90	UniRef90_A0A132YZG1	Major capsid protein	NA
UHGV-0040197_12	eggNOG-mapper	565664.EFXG_02659	Phage capsid family	NA
UHGV-0040197_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0040197_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0040197_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0040197_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0040197_13	KOfam	K06904	NA	NA
UHGV-0040197_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0040197_13	UniRef90	UniRef90_A0A829FHT1	HK97 family phage prohead protease	NA
UHGV-0040197_13	eggNOG-mapper	565664.EFXG_02660	Caudovirus prohead serine protease	NA
UHGV-0040197_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0040197_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0040197_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0040197_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0040197_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0040197_14	UniRef90	UniRef90_A0A377KN49	Phage portal protein	NA
UHGV-0040197_14	eggNOG-mapper	565664.EFXG_02661	Phage portal protein	NA
UHGV-0040197_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0040197_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0040197_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0040197_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0040197_15	UniRef90	UniRef90_A0A132P9B0	Terminase	NA
UHGV-0040197_15	eggNOG-mapper	565664.EFXG_02662	Phage Terminase	NA
UHGV-0040197_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0040197_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0040197_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0040197_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0040197_16	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0040197_16	UniRef90	UniRef90_A0A2K8TFV2	Terminase small subunit	NA
UHGV-0040197_16	eggNOG-mapper	565664.EFXG_02663	NA	NA
UHGV-0040197_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0040197_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0040197_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040197_17	UniRef90	UniRef90_A0A2K8TFR7	Endonuclease	NA
UHGV-0040197_17	eggNOG-mapper	565664.EFXG_02664	HNH endonuclease	NA
UHGV-0040197_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0040197_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0040197_17	Structural annotation	PF05766	NA	NA
UHGV-0040197_18	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0040197_18	UniRef90	UniRef90_UPI000CF30667	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0040197_18	eggNOG-mapper	565664.EFXG_02665	NA	NA
UHGV-0040197_18	Structural annotation	PF09124	NA	NA
UHGV-0040197_19	PHROG	phrog_5859	NA	unknown function
UHGV-0040197_19	eggNOG-mapper	1158604.I591_00521	NA	NA
UHGV-0040197_19	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0040197_20	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0040197_20	UniRef90	UniRef90_A0A132Z085	NA	NA
UHGV-0040197_20	eggNOG-mapper	861455.HMPREF9184_01014	NA	NA
UHGV-0040197_20	Pfam	PF13643	NA	DUF4145
UHGV-0040197_20	Structural annotation	PF06573	NA	NA
UHGV-0040197_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0040197_22	UniRef90	UniRef90_R2MBH8	Sigma70_r4_2 domain-containing protein	NA
UHGV-0040197_22	eggNOG-mapper	565664.EFXG_02668	NA	NA
UHGV-0040197_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0040197_22	Structural annotation	PF04545, MF_00674, TIGR02984	NA	NA
UHGV-0040197_23	PHROG	phrog_20330	NA	unknown function
UHGV-0040197_23	eggNOG-mapper	565664.EFXG_02669	NA	NA
UHGV-0040197_24	PHROG	phrog_6766	NA	unknown function
UHGV-0040197_24	eggNOG-mapper	565664.EFXG_02670	NA	NA
UHGV-0040197_25	PHROG	phrog_3356	transposase	integration and excision
UHGV-0040197_25	UniRef90	UniRef90_C9A182	Predicted protein	NA
UHGV-0040197_25	eggNOG-mapper	565664.EFXG_02671	NA	NA
UHGV-0040197_25	Structural annotation	PF06056	NA	NA
UHGV-0040197_26	PHROG	phrog_5403	NA	unknown function
UHGV-0040197_26	UniRef90	UniRef90_V5XLE1	Gp58	NA
UHGV-0040197_26	eggNOG-mapper	1158604.I591_00515	NA	NA
UHGV-0040197_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0040197_28	UniRef90	UniRef90_UPI001F0C5654	NA	NA
UHGV-0040197_28	eggNOG-mapper	565664.EFXG_02673	NA	NA
UHGV-0040197_28	Pfam	PF06356	NA	DUF1064
UHGV-0040197_28	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0040197_30	PHROG	phrog_13888	NA	unknown function
UHGV-0040197_30	eggNOG-mapper	565664.EFXG_02674	NA	NA
UHGV-0040197_30	Structural annotation	PF11011	NA	NA
UHGV-0040197_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0040197_31	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0040197_31	UniRef90	UniRef90_R2P9W1	AAA domain-containing protein	NA
UHGV-0040197_31	eggNOG-mapper	565664.EFXG_02675	IstB-like ATP binding protein	NA
UHGV-0040197_31	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0040197_31	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0040197_31	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0040197_32	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0040197_32	UniRef90	UniRef90_V5XNV4	DNA replication protein	NA
UHGV-0040197_32	eggNOG-mapper	1300150.EMQU_0767	DnaD domain protein	NA
UHGV-0040197_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0040197_32	Structural annotation	TIGR01610	NA	NA
UHGV-0040197_33	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040197_33	UniRef90	UniRef90_R2MBG6	NA	NA
UHGV-0040197_33	eggNOG-mapper	565664.EFXG_02677	NA	NA
UHGV-0040197_33	Pfam	PF12684	NA	DUF3799
UHGV-0040197_33	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0040197_33	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0040197_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0040197_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0040197_34	UniRef90	UniRef90_A0A377L4G2	RecT protein	NA
UHGV-0040197_34	eggNOG-mapper	565664.EFXG_02678	RecT family	NA
UHGV-0040197_34	Pfam	PF03837	RecT family	RecT
UHGV-0040197_34	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0040197_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0040197_34	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0040197_35	PHROG	phrog_31313	NA	unknown function
UHGV-0040197_35	UniRef90	UniRef90_C9A174	Predicted protein	NA
UHGV-0040197_35	eggNOG-mapper	565664.EFXG_02679	NA	NA
UHGV-0040197_35	Structural annotation	PF09466	NA	NA
UHGV-0040197_37	PHROG	phrog_3012	NA	unknown function
UHGV-0040197_37	eggNOG-mapper	565664.EFXG_02680	NA	NA
UHGV-0040197_37	Structural annotation	PF00410, MF_01302_B	NA	NA
UHGV-0040197_38	PHROG	phrog_4690	NA	unknown function
UHGV-0040197_38	eggNOG-mapper	565664.EFXG_02681	NA	NA
UHGV-0040197_39	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040197_39	UniRef90	UniRef90_C7CWF6	Predicted protein	NA
UHGV-0040197_39	eggNOG-mapper	1158609.I586_00055	NA	NA
UHGV-0040197_39	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0040197_39	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0040197_40	eggNOG-mapper	1140001.I571_01809	NA	NA
UHGV-0040197_41	UniRef90	UniRef90_A0A5R9C6P4	Helix-turn-helix domain-containing protein	NA
UHGV-0040197_41	eggNOG-mapper	1140001.I571_01808	NA	NA
UHGV-0040197_41	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-0040197_42	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0040197_42	UniRef90	UniRef90_A0A0J8GJR2	Phage DNA-binding protein	NA
UHGV-0040197_42	eggNOG-mapper	1260356.D920_01209	NA	NA
UHGV-0040197_42	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0040197_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0040197_43	UniRef90	UniRef90_A0A828QBV8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0040197_43	eggNOG-mapper	1201292.DR75_1672	Helix-turn-helix XRE-family like proteins	NA
UHGV-0040197_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0040197_43	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0040197_44	PHROG	phrog_87	metallo-protease	other
UHGV-0040197_44	UniRef90	UniRef90_A0A828QC68	Peptidase_M78 domain-containing protein	NA
UHGV-0040197_44	eggNOG-mapper	1260356.D920_01820	IrrE N-terminal-like domain	NA
UHGV-0040197_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0040197_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0040197_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0040197_45	PHROG	phrog_3374	NA	unknown function
UHGV-0040197_45	eggNOG-mapper	1140001.I571_01804	NA	NA
UHGV-0040197_46	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0040197_46	PHROG	phrog_37326	NA	unknown function
UHGV-0040197_46	UniRef90	UniRef90_A0A377L6J1	LysM domain lipoprotein	NA
UHGV-0040197_46	eggNOG-mapper	565664.EFXG_02688	LysM domain	NA
UHGV-0040197_46	Pfam	PF01476	LysM domain	LysM
UHGV-0040197_46	COG	COG1388	LysM repeat	NA
UHGV-0040197_47	KOfam	K14059	int; integrase	NA
UHGV-0040197_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0040197_47	UniRef90	UniRef90_A0A2K8TFU7	Site-specific integrase	NA
UHGV-0040197_47	eggNOG-mapper	1140001.I571_01803	Belongs to the 'phage' integrase family	NA
UHGV-0040197_47	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0040197_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0040197_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0040197_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0040197_47	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0040197_48	KOfam	K22106	fatR, bscR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon	NA
UHGV-0040197_48	UniRef90	UniRef90_A0A1V8YC20	TetR family transcriptional regulator	NA
UHGV-0040197_48	eggNOG-mapper	1140001.I571_01801	WHG domain	NA
UHGV-0040197_48	Pfam	PF00440	Bacterial regulatory proteins, tetR family	TetR_N
UHGV-0040197_48	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA