UHGV-0040213

Genome information

Genome length 54,463 bps

CDS count 69

Completeness 92.41% (high-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040213
vOTU ID	vOTU-013738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1557
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34
Jumbo phage	No

Genome content
Genome length	54,463 bps
GC content	39.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	93.84%
Average CDS length	744.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040213_3	eggNOG-mapper	226186.BT_0845	NA	NA
UHGV-0040213_4	UniRef90	UniRef90_A0A0P0F589	NA	NA
UHGV-0040213_4	Pfam	PF08139	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
UHGV-0040213_4	Pfam	PF18692	NA	DUF5640
UHGV-0040213_5	UniRef90	UniRef90_A0A6N4XT34	HTH cro/C1-type domain-containing protein	NA
UHGV-0040213_5	eggNOG-mapper	679190.HMPREF0650_0093	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0040213_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0040213_7	eggNOG-mapper	1392486.JIAF01000004_gene846	NA	NA
UHGV-0040213_11	KOfam	K07688	fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ	NA
UHGV-0040213_11	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-0040213_11	UniRef90	UniRef90_A0A0P0FLR5	LuxR family transcriptional regulator	NA
UHGV-0040213_11	eggNOG-mapper	226186.BT_0850	transcriptional regulator, LuxR family	NA
UHGV-0040213_11	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0040213_11	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0040213_11	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-0040213_12	eggNOG-mapper	226186.BT_0851	NA	NA
UHGV-0040213_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0040213_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0040213_14	UniRef90	UniRef90_UPI00189CFCE3	recombinase RecT	NA
UHGV-0040213_14	eggNOG-mapper	1121097.JCM15093_2722	RecT family	NA
UHGV-0040213_14	Pfam	PF03837	RecT family	RecT
UHGV-0040213_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0040213_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0040213_15	eggNOG-mapper	1347393.HG726021_gene407	NA	NA
UHGV-0040213_16	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0040213_16	UniRef90	UniRef90_UPI0004B08063	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0040213_16	eggNOG-mapper	1347393.HG726021_gene406	NA	NA
UHGV-0040213_16	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0040213_17	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0040213_17	eggNOG-mapper	484018.BACPLE_02413	NA	NA
UHGV-0040213_17	Structural annotation	PF11056	NA	NA
UHGV-0040213_19	eggNOG-mapper	484018.BACPLE_02415	NA	NA
UHGV-0040213_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0040213_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0040213_20	UniRef90	UniRef90_A0A069D553	Helicase domain protein	NA
UHGV-0040213_20	eggNOG-mapper	1121097.JCM15093_2717	SNF2 family N-terminal domain	NA
UHGV-0040213_20	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0040213_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0040213_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0040213_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0040213_20	Structural annotation	PF05203, PF00176, PF00271, MF_01821, NF041790, NF005852, COG0553, COG1372	NA	NA
UHGV-0040213_21	UniRef90	UniRef90_D7K080	Putative DNA polymerase (TO POL)	NA
UHGV-0040213_24	eggNOG-mapper	411901.BACCAC_01196	NA	NA
UHGV-0040213_26	Pfam	PF00924	Mechanosensitive ion channel, beta-domain	MS_channel_2nd
UHGV-0040213_27	PHROG	phrog_824	NA	unknown function
UHGV-0040213_27	UniRef90	UniRef90_A0A0J9FEX8	VRR-NUC domain-containing protein	NA
UHGV-0040213_27	eggNOG-mapper	484018.BACPLE_02423	VRR_NUC	NA
UHGV-0040213_27	Structural annotation	PF08774	NA	NA
UHGV-0040213_28	eggNOG-mapper	449673.BACSTE_00844	NA	NA
UHGV-0040213_29	UniRef90	UniRef90_UPI0018C9DB42	restriction endonuclease	NA
UHGV-0040213_29	eggNOG-mapper	357276.EL88_08255	Restriction endonuclease	NA
UHGV-0040213_29	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0040213_29	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0040213_30	PHROG	phrog_19951	NA	unknown function
UHGV-0040213_30	UniRef90	UniRef90_UPI000E514343	bacteriophage abortive infection AbiH family protein	NA
UHGV-0040213_30	eggNOG-mapper	742766.HMPREF9455_03492	Bacteriophage abortive infection AbiH	NA
UHGV-0040213_30	PADLOC	AbiH	AbiH	Abi
UHGV-0040213_30	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-0040213_30	Structural annotation	PF14253	NA	NA
UHGV-0040213_33	eggNOG-mapper	376686.Fjoh_2692	NA	NA
UHGV-0040213_34	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0040213_35	PHROG	phrog_315	endolysin	lysis
UHGV-0040213_35	UniRef90	UniRef90_A0A3E5H9U9	Peptidoglycan domain protein	NA
UHGV-0040213_35	eggNOG-mapper	357276.EL88_11190	Glycosyl hydrolase 108	NA
UHGV-0040213_35	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0040213_35	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0040213_35	COG	COG3926	Lysozyme family protein	NA
UHGV-0040213_35	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0040213_37	PHROG	phrog_32423	NA	unknown function
UHGV-0040213_37	eggNOG-mapper	657309.BXY_05120	NA	NA
UHGV-0040213_38	PHROG	phrog_30034	NA	unknown function
UHGV-0040213_38	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0040213_40	UniRef90	UniRef90_UPI000E4DD471	phage neck protein fibritin	NA
UHGV-0040213_40	eggNOG-mapper	1122931.AUAE01000005_gene3260	NA	NA
UHGV-0040213_40	Pfam	PF07921	Fibritin C-terminal region	Fibritin_C
UHGV-0040213_41	PHROG	phrog_38044	NA	unknown function
UHGV-0040213_41	UniRef90	UniRef90_A0A174Q874	Carbohydrate binding domain	NA
UHGV-0040213_41	eggNOG-mapper	1347393.HG726021_gene469	COG3209 Rhs family protein	NA
UHGV-0040213_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0040213_41	COG	COG4926	Phage-related protein	NA
UHGV-0040213_42	PHROG	phrog_6305	tail protein	tail
UHGV-0040213_42	eggNOG-mapper	357276.EL88_22740	NA	NA
UHGV-0040213_42	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0040213_43	PHROG	phrog_32115	NA	unknown function
UHGV-0040213_43	UniRef90	UniRef90_UPI001CE25769	phage tail tape measure protein	NA
UHGV-0040213_43	eggNOG-mapper	1347393.HG726031_gene3980	Phage-related minor tail protein	NA
UHGV-0040213_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0040213_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0040213_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0040213_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0040213_45	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040213_45	UniRef90	UniRef90_A0A897I2R4	AP2/ERF domain-containing protein	NA
UHGV-0040213_45	eggNOG-mapper	1540090.A0A0A0RNN0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0040213_45	Pfam	PF00847	AP2 domain	AP2
UHGV-0040213_45	Structural annotation	PF13973	NA	NA
UHGV-0040213_47	eggNOG-mapper	484018.BACPLE_00657	NA	NA
UHGV-0040213_48	eggNOG-mapper	484018.BACPLE_00659	NA	NA
UHGV-0040213_49	eggNOG-mapper	484018.BACPLE_00660	NA	NA
UHGV-0040213_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0040213_50	PHROG	phrog_5597	NA	unknown function
UHGV-0040213_50	eggNOG-mapper	484018.BACPLE_00661	NA	NA
UHGV-0040213_50	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0040213_51	PHROG	phrog_5377	NA	unknown function
UHGV-0040213_51	UniRef90	UniRef90_UPI00189E77B6	HK97 gp10 family phage protein	NA
UHGV-0040213_51	eggNOG-mapper	484018.BACPLE_00662	NA	NA
UHGV-0040213_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0040213_52	eggNOG-mapper	484018.BACPLE_00663	NA	NA
UHGV-0040213_52	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0040213_53	eggNOG-mapper	484018.BACPLE_00664	NA	NA
UHGV-0040213_53	Structural annotation	PF20449	NA	NA
UHGV-0040213_54	PHROG	phrog_29	major head protein	head and packaging
UHGV-0040213_54	UniRef90	UniRef90_A0A416VUG2	Major capsid protein E	NA
UHGV-0040213_54	eggNOG-mapper	484018.BACPLE_00665	Phage major capsid protein E	NA
UHGV-0040213_54	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0040213_54	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0040213_55	PHROG	phrog_20501	NA	unknown function
UHGV-0040213_55	eggNOG-mapper	484018.BACPLE_00666	NA	NA
UHGV-0040213_56	eggNOG-mapper	484018.BACPLE_00667	NA	NA
UHGV-0040213_58	PHROG	phrog_35295	NA	unknown function
UHGV-0040213_58	UniRef90	UniRef90_A0A415M3M3	Gln_amidase domain-containing protein	NA
UHGV-0040213_58	eggNOG-mapper	484018.BACPLE_00669	NA	NA
UHGV-0040213_58	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0040213_58	Structural annotation	PF06152	NA	NA
UHGV-0040213_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0040213_59	UniRef90	UniRef90_A0A139KRB6	Phage portal protein, SPP1 family	NA
UHGV-0040213_59	eggNOG-mapper	484018.BACPLE_00670	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0040213_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0040213_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0040213_60	eggNOG-mapper	1313421.JHBV01000144_gene1170	NA	NA
UHGV-0040213_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0040213_61	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-0040213_61	eggNOG-mapper	484018.BACPLE_00672	domain protein	NA
UHGV-0040213_61	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0040213_61	COG	COG5410	NA	NA
UHGV-0040213_61	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0040213_62	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0040213_62	UniRef90	UniRef90_A0A1E9CD04	Terminase	NA
UHGV-0040213_62	eggNOG-mapper	484018.BACPLE_00673	transposase activity	NA
UHGV-0040213_62	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0040213_62	Structural annotation	PF07141	NA	NA
UHGV-0040213_63	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0040213_63	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0040213_63	UniRef90	UniRef90_UPI000FDA95A5	protein Mom	NA
UHGV-0040213_63	eggNOG-mapper	1122931.AUAE01000005_gene3268	NA	NA
UHGV-0040213_63	Structural annotation	PF16092, MF_02210, NF007025, COG0456	NA	NA
UHGV-0040213_64	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0040213_64	UniRef90	UniRef90_E5UUW0	DNA methylase N-4/N-6	NA
UHGV-0040213_64	eggNOG-mapper	1122931.AUAE01000005_gene3269	NA	NA
UHGV-0040213_65	eggNOG-mapper	1121097.JCM15093_3229	NA	NA
UHGV-0040213_65	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0040213_66	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0040213_66	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0040213_66	UniRef90	UniRef90_A0A415M3J1	Replicative DNA helicase	NA
UHGV-0040213_66	eggNOG-mapper	1077285.AGDG01000032_gene4386	Participates in initiation and elongation during chromosome replication	NA
UHGV-0040213_66	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0040213_66	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0040213_66	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0040213_66	COG	COG0305	Replicative DNA helicase	NA
UHGV-0040213_66	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0040213_67	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0040213_67	UniRef90	UniRef90_A0A415M3J3	ATP-binding protein	NA
UHGV-0040213_67	eggNOG-mapper	1121097.JCM15093_3228	DNA-dependent DNA replication	NA
UHGV-0040213_67	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0040213_68	PHROG	phrog_23776	NA	unknown function
UHGV-0040213_68	UniRef90	UniRef90_UPI001D0921D0	helix-turn-helix domain-containing protein	NA
UHGV-0040213_68	eggNOG-mapper	1347393.HG726021_gene366	DnaD domain protein	NA
UHGV-0040213_68	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0040213_68	Structural annotation	PF01978, MF_01819, NF040939, COG5625	NA	NA