UHGV-0040419

Genome information

Genome length 30,594 bps

CDS count 51

Completeness 72.65% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040419
vOTU ID	vOTU-017556
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2021
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.1
Jumbo phage	No

Genome content
Genome length	30,594 bps
GC content	47.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.98%
Average CDS length	568.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040419_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0040419_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0040419_1	UniRef90	UniRef90_A0A3A9CHG7	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0040419_1	eggNOG-mapper	1235802.C823_04696	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0040419_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0040419_1	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-0040419_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0040419_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0040419_2	UniRef90	UniRef90_A0A396NP33	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0040419_2	eggNOG-mapper	796940.HMPREF9628_01282	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0040419_2	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0040419_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0040419_2	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0040419_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0040419_2	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0040419_3	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0040419_3	PHROG	phrog_3513	endolysin	lysis
UHGV-0040419_3	UniRef90	UniRef90_A0A396P8X6	LYZ2 domain-containing protein	NA
UHGV-0040419_3	eggNOG-mapper	1341157.RF007C_12385	mannosyl-glycoprotein	NA
UHGV-0040419_3	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0040419_3	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0040419_4	PHROG	phrog_13256	NA	unknown function
UHGV-0040419_4	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0040419_6	PHROG	phrog_937	hemolysin	other
UHGV-0040419_6	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0040419_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0040419_7	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0040419_7	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0040419_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0040419_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0040419_7	COG	COG4926	Phage-related protein	NA
UHGV-0040419_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0040419_8	PHROG	phrog_2310	NA	unknown function
UHGV-0040419_8	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0040419_9	UniRef90	UniRef90_R5ANH3	Putative flagellar basal-body rod protein	NA
UHGV-0040419_10	PHROG	phrog_3639	minor tail protein	tail
UHGV-0040419_10	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-0040419_10	eggNOG-mapper	1340434.AXVA01000005_gene4869	Periplasmic copper-binding protein (NosD)	NA
UHGV-0040419_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0040419_10	COG	COG5434	Polygalacturonase	NA
UHGV-0040419_10	Structural annotation	PF10651, PF05475, NF033675, COG4935	NA	NA
UHGV-0040419_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0040419_11	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0040419_11	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0040419_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0040419_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0040419_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0040419_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0040419_12	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0040419_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0040419_13	PHROG	phrog_706	NA	unknown function
UHGV-0040419_13	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-0040419_13	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0040419_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0040419_13	Structural annotation	PF06854	NA	NA
UHGV-0040419_14	Structural annotation	PF20378	NA	NA
UHGV-0040419_15	PHROG	phrog_3099	NA	unknown function
UHGV-0040419_15	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0040419_15	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0040419_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0040419_16	PHROG	phrog_3266	tail completion	connector
UHGV-0040419_16	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-0040419_16	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0040419_16	Structural annotation	PF12691	NA	NA
UHGV-0040419_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0040419_17	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0040419_17	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-0040419_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0040419_17	Structural annotation	PF11114	NA	NA
UHGV-0040419_18	PHROG	phrog_3366	NA	unknown function
UHGV-0040419_18	Pfam	PF20536	NA	DUF6751
UHGV-0040419_18	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0040419_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0040419_19	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0040419_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0040419_21	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0040419_21	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0040419_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0040419_24	PHROG	phrog_15041	NA	unknown function
UHGV-0040419_24	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0040419_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0040419_25	UniRef90	UniRef90_A0A396NP47	Phage capsid protein	NA
UHGV-0040419_25	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0040419_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0040419_25	COG	COG2369	NA	NA
UHGV-0040419_25	Structural annotation	PF06152	NA	NA
UHGV-0040419_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0040419_26	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-0040419_26	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0040419_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0040419_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0040419_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0040419_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0040419_27	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-0040419_27	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-0040419_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0040419_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0040419_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0040419_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0040419_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0040419_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0040419_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0040419_28	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0040419_28	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0040419_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0040419_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0040419_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0040419_29	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0040419_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0040419_30	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0040419_30	Structural annotation	PF02996	NA	NA
UHGV-0040419_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0040419_31	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0040419_31	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0040419_33	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0040419_34	PHROG	phrog_10714	NA	unknown function
UHGV-0040419_34	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0040419_34	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0040419_35	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0040419_35	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0040419_35	UniRef90	UniRef90_A0A396NP54	DNA adenine methylase	NA
UHGV-0040419_35	eggNOG-mapper	1235802.C823_01030	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0040419_35	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0040419_35	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0040419_35	COG	COG0338	DNA-adenine methylase	NA
UHGV-0040419_35	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0040419_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0040419_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0040419_36	UniRef90	UniRef90_A0A396P910	Single-stranded DNA-binding protein	NA
UHGV-0040419_36	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0040419_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0040419_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0040419_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0040419_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0040419_36	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0040419_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0040419_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0040419_37	UniRef90	UniRef90_A0A396NX04	IstB_IS21 domain-containing protein	NA
UHGV-0040419_37	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0040419_37	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0040419_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0040419_37	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0040419_38	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0040419_38	UniRef90	UniRef90_A0A350TWM2	NA	NA
UHGV-0040419_38	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0040419_38	Pfam	PF19808	NA	DUF6291
UHGV-0040419_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0040419_39	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0040419_39	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0040419_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0040419_40	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0040419_40	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0040419_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0040419_41	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040419_41	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0040419_41	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0040419_41	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0040419_49	UniRef90	UniRef90_A0A396NP63	NA	NA
UHGV-0040419_49	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0040419_49	Pfam	PF05339	NA	DUF739
UHGV-0040419_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0040419_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0040419_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0040419_50	UniRef90	UniRef90_A0A396P920	XRE family transcriptional regulator	NA
UHGV-0040419_50	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0040419_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0040419_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0040419_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0040419_50	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0040419_51	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0040419_51	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040419_51	UniRef90	UniRef90_A0A396NX14	Endonuclease	NA
UHGV-0040419_51	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0040419_51	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0040419_51	COG	COG4748	NA	NA
UHGV-0040419_51	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA