UHGV-0040552

Genome information

Genome length 25,549 bps

CDS count 33

Completeness 67.04% (medium-quality)

geNomad score 0.9833

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040552
vOTU ID	vOTU-036459
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_11_CHE0009BZ__NODE_1338_length_25549_cov_10.164965
BioSample	SAMEA4969123
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9833
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.48
Jumbo phage	No

Genome content
Genome length	25,549 bps
GC content	47.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.76%
Average CDS length	730.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040552_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0040552_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0040552_1	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0040552_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0040552_4	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0040552_5	PHROG	phrog_21718	NA	unknown function
UHGV-0040552_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0040552_6	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0040552_7	COG	COG5492	NA	NA
UHGV-0040552_7	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0040552_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0040552_8	PHROG	phrog_435	endolysin	lysis
UHGV-0040552_8	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0040552_8	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0040552_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0040552_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0040552_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0040552_9	PHROG	phrog_1129	holin	lysis
UHGV-0040552_9	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0040552_9	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0040552_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0040552_9	Structural annotation	PF06946	NA	NA
UHGV-0040552_10	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0040552_14	PHROG	phrog_9478	minor tail protein	tail
UHGV-0040552_14	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0040552_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0040552_14	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0040552_15	PHROG	phrog_5163	minor tail protein	tail
UHGV-0040552_15	UniRef90	UniRef90_A0A1C5RIA0	Phage-related protein	NA
UHGV-0040552_15	eggNOG-mapper	1158610.UC3_03184	Phage tail protein	NA
UHGV-0040552_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0040552_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0040552_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0040552_15	Structural annotation	PF05709, PF11614, TIGR01633, COG4722	NA	NA
UHGV-0040552_16	PHROG	phrog_1204	tail protein	tail
UHGV-0040552_16	UniRef90	UniRef90_A0A7Y8VRG3	Tape measure protein	NA
UHGV-0040552_16	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0040552_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0040552_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0040552_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0040552_16	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0040552_17	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0040552_17	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0040552_17	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0040552_18	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0040552_18	UniRef90	UniRef90_UPI001E3CACFF	tail assembly chaperone	NA
UHGV-0040552_18	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0040552_18	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0040552_18	Structural annotation	PF12363	NA	NA
UHGV-0040552_19	PHROG	phrog_238	major tail protein	tail
UHGV-0040552_19	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-0040552_19	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0040552_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0040552_19	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0040552_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0040552_20	PHROG	phrog_176	tail terminator	connector
UHGV-0040552_20	UniRef90	UniRef90_A0A3E3JYL5	NA	NA
UHGV-0040552_20	eggNOG-mapper	1235798.C817_03472	NA	NA
UHGV-0040552_20	Structural annotation	PF11367	NA	NA
UHGV-0040552_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0040552_21	UniRef90	UniRef90_UPI00197CA78F	HK97 gp10 family phage protein	NA
UHGV-0040552_21	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0040552_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0040552_21	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0040552_22	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0040552_22	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0040552_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0040552_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0040552_23	UniRef90	UniRef90_A0A391NY33	Phage head-tail adapter protein	NA
UHGV-0040552_23	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0040552_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0040552_23	Structural annotation	PF05135	NA	NA
UHGV-0040552_24	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0040552_24	eggNOG-mapper	1145276.T479_19965	NA	NA
UHGV-0040552_25	PHROG	phrog_840	major head protein	head and packaging
UHGV-0040552_25	UniRef90	UniRef90_A0A352CVQ3	Phage capsid protein	NA
UHGV-0040552_25	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0040552_25	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0040552_26	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0040552_26	UniRef90	UniRef90_UPI0019607A58	NA	NA
UHGV-0040552_26	eggNOG-mapper	553184.ATORI0001_1003	NA	NA
UHGV-0040552_26	Pfam	PF14265	NA	DUF4355
UHGV-0040552_26	Structural annotation	PF14265	NA	NA
UHGV-0040552_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0040552_28	UniRef90	UniRef90_UPI001C00D799	minor capsid protein	NA
UHGV-0040552_28	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0040552_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0040552_28	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0040552_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0040552_28	COG	COG2369	NA	NA
UHGV-0040552_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0040552_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0040552_29	UniRef90	UniRef90_A0A352CU27	Phage portal protein	NA
UHGV-0040552_29	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0040552_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0040552_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0040552_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0040552_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0040552_30	PHROG	phrog_10250	NA	unknown function
UHGV-0040552_30	UniRef90	UniRef90_UPI00088B4057	PBSX family phage terminase large subunit	NA
UHGV-0040552_30	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0040552_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0040552_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0040552_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0040552_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0040552_31	PHROG	phrog_2412	NA	unknown function
UHGV-0040552_31	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0040552_31	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0040552_32	PHROG	phrog_2431	NA	unknown function
UHGV-0040552_32	UniRef90	UniRef90_R5WJG4	NA	NA
UHGV-0040552_32	eggNOG-mapper	573061.Clocel_3983	NA	NA
UHGV-0040552_32	Pfam	PF14192	NA	DUF4314
UHGV-0040552_32	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0040552_32	Structural annotation	PF14192	NA	NA
UHGV-0040552_33	PHROG	phrog_38038	NA	unknown function
UHGV-0040552_33	UniRef90	UniRef90_A0A7X5EDN9	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0040552_33	eggNOG-mapper	411490.ANACAC_00745	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0040552_33	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0040552_33	COG	COG0270	DNA-cytosine methylase	NA