UHGV-0040635

Genome information

Genome length 36,257 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040635
vOTU ID	vOTU-010274
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_807
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.99
Jumbo phage	No

Genome content
Genome length	36,257 bps
GC content	40.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.89%
Average CDS length	565.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040635_1	eggNOG-mapper	33035.JPJF01000072_gene4392	NA	NA
UHGV-0040635_1	COG	COG3843	Type IV secretory pathway, VirD2 component (relaxase)	NA
UHGV-0040635_2	KOfam	K14059	int; integrase	NA
UHGV-0040635_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0040635_2	UniRef90	UniRef90_A0A374BUR5	Site-specific integrase	NA
UHGV-0040635_2	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0040635_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0040635_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0040635_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0040635_4	PHROG	phrog_8279	NA	unknown function
UHGV-0040635_4	UniRef90	UniRef90_UPI001A9A5F68	NA	NA
UHGV-0040635_4	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0040635_4	Pfam	PF14020	NA	DUF4236
UHGV-0040635_4	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0040635_4	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0040635_5	PHROG	phrog_87	metallo-protease	other
UHGV-0040635_5	UniRef90	UniRef90_A0A374BT00	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0040635_5	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0040635_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0040635_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0040635_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0040635_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0040635_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0040635_6	UniRef90	UniRef90_A0A374BSX4	XRE family transcriptional regulator	NA
UHGV-0040635_6	eggNOG-mapper	742723.HMPREF9477_00937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0040635_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0040635_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0040635_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0040635_7	UniRef90	UniRef90_A0A374BSX1	XRE family transcriptional regulator	NA
UHGV-0040635_7	eggNOG-mapper	742723.HMPREF9477_00936	Helix-turn-helix	NA
UHGV-0040635_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0040635_7	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0040635_9	PHROG	phrog_32168	NA	unknown function
UHGV-0040635_9	Structural annotation	PF13248, MF_00788, NF041910, COG1552	NA	NA
UHGV-0040635_10	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-0040635_11	PHROG	phrog_3240	NA	unknown function
UHGV-0040635_11	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-0040635_12	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0040635_12	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0040635_17	PHROG	phrog_674	NA	unknown function
UHGV-0040635_17	UniRef90	UniRef90_A0A374BT10	NA	NA
UHGV-0040635_17	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0040635_17	Pfam	PF07083	NA	DUF1351
UHGV-0040635_17	Structural annotation	PF07083	NA	NA
UHGV-0040635_18	PHROG	phrog_14970	NA	unknown function
UHGV-0040635_18	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0040635_18	eggNOG-mapper	697329.Rumal_1121	double-strand break repair protein	NA
UHGV-0040635_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0040635_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0040635_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0040635_19	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0040635_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0040635_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0040635_21	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0040635_21	UniRef90	UniRef90_A0A374BV90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0040635_21	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0040635_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0040635_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0040635_21	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0040635_22	PHROG	phrog_15768	NA	unknown function
UHGV-0040635_22	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0040635_22	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0040635_22	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0040635_23	UniRef90	UniRef90_A0A374BVU4	NA	NA
UHGV-0040635_23	eggNOG-mapper	411470.RUMGNA_02006	NA	NA
UHGV-0040635_23	Pfam	PF14199	NA	DUF4317
UHGV-0040635_23	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0040635_26	UniRef90	UniRef90_A0A174FEC7	HTH-type transcriptional regulator immR	NA
UHGV-0040635_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0040635_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0040635_27	UniRef90	UniRef90_A0A374BUX3	Helicase	NA
UHGV-0040635_27	eggNOG-mapper	411473.RUMCAL_00274	DEAD-like helicases superfamily	NA
UHGV-0040635_27	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0040635_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0040635_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0040635_27	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0040635_28	KOfam	K24451	zim; modification methylase	NA
UHGV-0040635_28	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0040635_28	UniRef90	UniRef90_A0A374BT14	Methyltransferase	NA
UHGV-0040635_28	eggNOG-mapper	411473.RUMCAL_00273	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0040635_28	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0040635_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0040635_28	COG	COG0863	DNA modification methylase	NA
UHGV-0040635_28	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0040635_29	Structural annotation	PF01917, NF006325	NA	NA
UHGV-0040635_30	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0040635_30	UniRef90	UniRef90_UPI001898E47B	SAM-dependent methyltransferase	NA
UHGV-0040635_30	eggNOG-mapper	796940.HMPREF9628_00165	methyltransferase	NA
UHGV-0040635_30	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0040635_30	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0040635_30	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0040635_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0040635_33	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-0040635_33	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0040635_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0040635_33	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0040635_35	PHROG	phrog_2412	NA	unknown function
UHGV-0040635_35	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0040635_35	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0040635_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0040635_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0040635_36	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0040635_36	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0040635_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0040635_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0040635_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0040635_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0040635_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0040635_37	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0040635_37	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0040635_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0040635_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0040635_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0040635_38	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0040635_38	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0040635_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0040635_38	COG	COG2369	NA	NA
UHGV-0040635_38	Structural annotation	PF06152	NA	NA
UHGV-0040635_39	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0040635_40	KOfam	K07584	NA	NA
UHGV-0040635_40	PHROG	phrog_4478	peptidase	other
UHGV-0040635_40	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0040635_40	eggNOG-mapper	1235792.C808_04675	Cysteine protease Prp	NA
UHGV-0040635_40	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0040635_40	COG	COG2868	NA	NA
UHGV-0040635_40	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0040635_41	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0040635_42	PHROG	phrog_267	major head protein	head and packaging
UHGV-0040635_42	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0040635_42	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0040635_42	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0040635_42	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0040635_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0040635_43	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0040635_43	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0040635_44	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0040635_44	UniRef90	UniRef90_UPI001915CA83	putative minor capsid protein	NA
UHGV-0040635_44	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0040635_44	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0040635_44	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0040635_44	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0040635_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0040635_45	UniRef90	UniRef90_UPI0015F726FA	minor capsid protein	NA
UHGV-0040635_45	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0040635_45	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0040635_46	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0040635_46	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0040635_46	Structural annotation	PF12691	NA	NA
UHGV-0040635_47	PHROG	phrog_820	major tail protein	tail
UHGV-0040635_47	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0040635_47	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0040635_47	COG	COG5492	NA	NA
UHGV-0040635_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0040635_48	Structural annotation	PF10666	NA	NA
UHGV-0040635_49	PHROG	phrog_706	NA	unknown function
UHGV-0040635_49	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0040635_49	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0040635_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0040635_49	Structural annotation	PF06854	NA	NA
UHGV-0040635_50	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0040635_50	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0040635_50	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0040635_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0040635_50	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0040635_50	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0040635_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0040635_51	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0040635_51	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0040635_52	PHROG	phrog_538	minor tail protein	tail
UHGV-0040635_52	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0040635_52	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0040635_52	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0040635_52	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0040635_53	PHROG	phrog_9994	NA	unknown function
UHGV-0040635_53	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0040635_53	eggNOG-mapper	411461.DORFOR_00732	NA	NA
UHGV-0040635_53	Structural annotation	PF20747	NA	NA
UHGV-0040635_54	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0040635_54	PHROG	phrog_11157	NA	unknown function
UHGV-0040635_54	UniRef90	UniRef90_A0A374BT09	Big_13 domain-containing protein	NA
UHGV-0040635_54	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0040635_54	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0040635_54	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0040635_54	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0040635_54	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0040635_54	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0040635_55	PHROG	phrog_32322	NA	unknown function
UHGV-0040635_55	UniRef90	UniRef90_A0A374BVJ2	Ig-like_bact domain-containing protein	NA
UHGV-0040635_55	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-0040635_55	Pfam	PF13754	NA	Big_3_4
UHGV-0040635_55	Structural annotation	PF13754	NA	NA
UHGV-0040635_56	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0040635_56	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0040635_57	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-0040635_58	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0040635_58	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0040635_59	PHROG	phrog_1129	holin	lysis
UHGV-0040635_59	UniRef90	UniRef90_UPI00156E9657	phage holin family protein	NA
UHGV-0040635_59	eggNOG-mapper	553973.CLOHYLEM_07148	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0040635_59	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0040635_59	Structural annotation	PF16079	NA	NA
UHGV-0040635_60	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0040635_60	PHROG	phrog_435	endolysin	lysis
UHGV-0040635_60	UniRef90	UniRef90_A0A374BT17	MurNAc-LAA domain-containing protein	NA
UHGV-0040635_60	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0040635_60	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0040635_60	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0040635_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0040635_60	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA