UHGV-0040926

Genome information

Genome length 39,467 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9442

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040926
vOTU ID	vOTU-065938
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_12_1518__NODE_1354_length_39467_cov_9.101142
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9442
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.28
Jumbo phage	No

Genome content
Genome length	39,467 bps
GC content	36.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.15%
Average CDS length	655.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040926_3	PHROG	phrog_15074	NA	unknown function
UHGV-0040926_3	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0040926_3	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-0040926_3	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0040926_4	eggNOG-mapper	1081640.AGFU01000049_gene774	Belongs to the glycosyl hydrolase 18 family	NA
UHGV-0040926_4	COG	COG3325	Chitinase, GH18 family	NA
UHGV-0040926_5	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0040926_5	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0040926_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0040926_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0040926_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0040926_5	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0040926_6	PHROG	phrog_706	NA	unknown function
UHGV-0040926_6	UniRef90	UniRef90_R6WB95	Bacteriophage Gp15 protein	NA
UHGV-0040926_6	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0040926_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0040926_6	Structural annotation	PF06854	NA	NA
UHGV-0040926_8	PHROG	phrog_3099	NA	unknown function
UHGV-0040926_8	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0040926_8	eggNOG-mapper	573061.Clocel_3536	NA	NA
UHGV-0040926_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0040926_9	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0040926_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0040926_10	UniRef90	UniRef90_A0A542AIW0	Minor capsid protein	NA
UHGV-0040926_10	eggNOG-mapper	1134413.ANNK01000120_gene2022	Minor capsid protein	NA
UHGV-0040926_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0040926_10	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0040926_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0040926_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0040926_13	UniRef90	UniRef90_A0A644YHM7	S-l_SbsC_C domain-containing protein	NA
UHGV-0040926_13	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0040926_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0040926_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0040926_14	UniRef90	UniRef90_A0A0D7KR46	Minor structural GP20 protein	NA
UHGV-0040926_14	eggNOG-mapper	1122918.KB907248_gene4500	Phage minor structural protein GP20	NA
UHGV-0040926_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0040926_14	Structural annotation	PF06810	NA	NA
UHGV-0040926_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0040926_15	UniRef90	UniRef90_U1GZ24	Phage minor capsid protein 2	NA
UHGV-0040926_15	eggNOG-mapper	1125725.HMPREF1325_1324	Phage minor capsid protein 2	NA
UHGV-0040926_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0040926_15	COG	COG2369	NA	NA
UHGV-0040926_15	Structural annotation	PF06152	NA	NA
UHGV-0040926_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0040926_16	UniRef90	UniRef90_A0A7V6NHH5	Phage portal protein	NA
UHGV-0040926_16	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0040926_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0040926_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0040926_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0040926_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0040926_17	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-0040926_17	eggNOG-mapper	12402.Q708N4_9CAUD	DNA packaging	NA
UHGV-0040926_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0040926_17	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0040926_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0040926_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0040926_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0040926_19	PHROG	phrog_12517	NA	unknown function
UHGV-0040926_19	UniRef90	UniRef90_A0A0R1TYW4	ParB-like protein	NA
UHGV-0040926_19	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0040926_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0040926_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0040926_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0040926_19	COG	COG0863	DNA modification methylase	NA
UHGV-0040926_19	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0040926_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0040926_31	UniRef90	UniRef90_UPI0013D6CDD4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0040926_31	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-0040926_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0040926_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0040926_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0040926_32	PHROG	phrog_3657	NA	unknown function
UHGV-0040926_32	eggNOG-mapper	580332.Slit_1947	NA	NA
UHGV-0040926_33	PHROG	phrog_674	NA	unknown function
UHGV-0040926_33	UniRef90	UniRef90_UPI00195E7F83	NA	NA
UHGV-0040926_33	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0040926_33	Pfam	PF07083	NA	DUF1351
UHGV-0040926_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040926_34	UniRef90	UniRef90_A0A417WEV5	Recombinase	NA
UHGV-0040926_34	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0040926_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0040926_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0040926_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0040926_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0040926_38	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0040926_38	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0040926_39	PHROG	phrog_4002	NA	unknown function
UHGV-0040926_39	UniRef90	UniRef90_A0A7Y3H6N2	NA	NA
UHGV-0040926_39	eggNOG-mapper	1122983.BAJY01000020_gene1134	NA	NA
UHGV-0040926_39	Pfam	PF14730	NA	DUF4468
UHGV-0040926_43	Pfam	PF05534	HicB family	HicB
UHGV-0040926_46	KOfam	K14059	int; integrase	NA
UHGV-0040926_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0040926_46	UniRef90	UniRef90_A0A7C1QCA4	Tyr recombinase domain-containing protein	NA
UHGV-0040926_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0040926_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0040926_46	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0040926_49	PHROG	phrog_1129	holin	lysis
UHGV-0040926_55	PHROG	phrog_19280	NA	unknown function
UHGV-0040926_55	UniRef90	UniRef90_A0A412ELS8	NA	NA
UHGV-0040926_55	Pfam	PF19789	NA	DUF6273