UHGV-0040963

Genome information

Genome length 48,110 bps

CDS count 72

Completeness 57.50% (medium-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-0040963
vOTU ID	vOTU-017977
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_265
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.71
Jumbo phage	No

Genome content
Genome length	48,110 bps
GC content	63.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	87.27%
Average CDS length	587.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0040963_1	KOfam	K16568	exoZ; exopolysaccharide production protein ExoZ	NA
UHGV-0040963_1	PHROG	phrog_6705	O-antigen acetylase	moron, auxiliary metabolic gene and host takeover
UHGV-0040963_1	UniRef90	UniRef90_A0A412JL73	Acetyltransferase	NA
UHGV-0040963_1	eggNOG-mapper	1504822.CCNO01000015_gene935	transferase activity, transferring acyl groups other than amino-acyl groups	NA
UHGV-0040963_1	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0040963_1	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0040963_1	Structural annotation	PF19040, PF01757, MF_01949, NF003014, COG1835	NA	NA
UHGV-0040963_4	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0040963_4	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0040963_4	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0040963_5	PHROG	phrog_21825	endolysin	lysis
UHGV-0040963_5	UniRef90	UniRef90_UPI001C58264B	CHAP domain-containing protein	NA
UHGV-0040963_5	eggNOG-mapper	479437.Elen_2649	CHAP domain	NA
UHGV-0040963_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0040963_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0040963_5	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0040963_8	PHROG	phrog_199	holin	lysis
UHGV-0040963_8	UniRef90	UniRef90_UPI0003ADC881	phage holin family protein	NA
UHGV-0040963_8	eggNOG-mapper	471855.Shel_15390	Bacteriophage holin family	NA
UHGV-0040963_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0040963_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0040963_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0040963_9	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0040963_9	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0040963_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0040963_10	KOfam	K14059	int; integrase	NA
UHGV-0040963_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0040963_10	UniRef90	UniRef90_UPI001E41DEB0	site-specific integrase	NA
UHGV-0040963_10	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0040963_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0040963_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0040963_10	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0040963_12	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-0040963_13	PHROG	phrog_6616	tail protein	tail
UHGV-0040963_13	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-0040963_13	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0040963_13	COG	COG4926	Phage-related protein	NA
UHGV-0040963_13	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0040963_14	PHROG	phrog_1194	NA	unknown function
UHGV-0040963_14	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0040963_14	Pfam	PF20458	NA	DUF6711
UHGV-0040963_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0040963_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0040963_15	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0040963_15	COG	COG5412	Phage-related protein	NA
UHGV-0040963_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0040963_16	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0040963_17	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0040963_17	Pfam	PF16478	NA	DUF5055
UHGV-0040963_17	Structural annotation	PF16478	NA	NA
UHGV-0040963_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0040963_19	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0040963_21	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0040963_22	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0040963_22	eggNOG-mapper	996306.SSUR61_0983	NA	NA
UHGV-0040963_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0040963_22	Structural annotation	TIGR01560	NA	NA
UHGV-0040963_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0040963_23	eggNOG-mapper	1123263.AUKY01000015_gene1612	NA	NA
UHGV-0040963_23	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0040963_25	PHROG	phrog_241	head morphogenesis	head and packaging
UHGV-0040963_25	eggNOG-mapper	1118054.CAGW01000097_gene4770	Phage Mu protein F like protein	NA
UHGV-0040963_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0040963_25	COG	COG2369	NA	NA
UHGV-0040963_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0040963_26	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0040963_26	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0040963_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0040963_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0040963_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0040963_27	UniRef90	UniRef90_UPI001D063AE7	phage terminase large subunit	NA
UHGV-0040963_27	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0040963_27	COG	COG5410	NA	NA
UHGV-0040963_27	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0040963_34	PHROG	phrog_15863	NA	unknown function
UHGV-0040963_34	UniRef90	UniRef90_A0A1Y4A1A8	J domain-containing protein	NA
UHGV-0040963_34	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0040963_34	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0040963_36	UniRef90	UniRef90_D6E899	Predicted endonuclease distantly related to archaeal Holliday junction resolvase	NA
UHGV-0040963_36	eggNOG-mapper	661087.HMPREF1008_00254	nuclease activity	NA
UHGV-0040963_36	COG	COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	NA
UHGV-0040963_38	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0040963_38	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0040963_38	UniRef90	UniRef90_UPI0018A02A45	DNA translocase FtsK	NA
UHGV-0040963_38	eggNOG-mapper	1210884.HG799472_gene14906	COG1674 DNA segregation ATPase FtsK SpoIIIE and related	NA
UHGV-0040963_38	PADLOC	SspH_00004	SspH	SSP
UHGV-0040963_38	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0040963_38	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0040963_43	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0040963_44	UniRef90	UniRef90_UPI001968270C	integration host factor	NA
UHGV-0040963_44	eggNOG-mapper	553184.ATORI0001_0557	integration host factor	NA
UHGV-0040963_44	COG	COG0099	Ribosomal protein S13	NA
UHGV-0040963_44	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0040963_45	PHROG	phrog_236	nucleotide kinase	other
UHGV-0040963_45	Pfam	PF11753	NA	DUF3310
UHGV-0040963_48	Pfam	PF20037	NA	DUF6440
UHGV-0040963_49	PHROG	phrog_21525	NA	unknown function
UHGV-0040963_50	PHROG	phrog_21525	NA	unknown function
UHGV-0040963_52	Structural annotation	PF18195, NF041655	NA	NA
UHGV-0040963_53	Structural annotation	PF18337, TIGR03318	NA	NA
UHGV-0040963_55	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0040963_56	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0040963_56	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0040963_56	UniRef90	UniRef90_UPI000931971B	dUTP diphosphatase	NA
UHGV-0040963_56	eggNOG-mapper	1504822.CCNO01000015_gene601	dUTP diphosphatase activity	NA
UHGV-0040963_56	Pfam	PF00692	dUTPase	dUTPase
UHGV-0040963_56	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0040963_56	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0040963_56	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0040963_57	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0040963_57	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0040963_57	UniRef90	UniRef90_UPI0013ED31B0	AAA family ATPase	NA
UHGV-0040963_57	eggNOG-mapper	1408415.JHXL01000003_gene1141	NA	NA
UHGV-0040963_57	Pfam	PF13481	AAA domain	AAA_25
UHGV-0040963_57	COG	COG3598	RecA-family ATPase	NA
UHGV-0040963_58	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0040963_58	eggNOG-mapper	1111121.HMPREF1247_0836	Primase C terminal 2 (PriCT-2)	NA
UHGV-0040963_58	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0040963_58	COG	COG3598	RecA-family ATPase	NA
UHGV-0040963_59	Structural annotation	PF05037	NA	NA
UHGV-0040963_60	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0040963_60	UniRef90	UniRef90_UPI0006881372	AAA family ATPase	NA
UHGV-0040963_60	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0040963_60	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0040963_63	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0040963_63	UniRef90	UniRef90_A0A086Z1J3	NA	NA
UHGV-0040963_63	eggNOG-mapper	1437605.BACT_1095	NA	NA
UHGV-0040963_63	Structural annotation	PF02272, NF040854	NA	NA
UHGV-0040963_69	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0040963_69	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0040963_69	UniRef90	UniRef90_UPI0013EB3637	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0040963_69	eggNOG-mapper	742722.HMPREF9463_00216	C-5 cytosine-specific DNA methylase	NA
UHGV-0040963_69	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0040963_69	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0040963_69	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0040963_70	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0040963_70	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0040963_70	UniRef90	UniRef90_A0A3D1WQC5	Phage antirepressor Ant	NA
UHGV-0040963_70	eggNOG-mapper	398513.BBNG_00818	BRO family, N-terminal domain	NA
UHGV-0040963_70	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0040963_70	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0040963_70	COG	COG3617	Prophage antirepressor	NA
UHGV-0040963_70	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0040963_71	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0040963_71	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0040963_71	UniRef90	UniRef90_A0A7C6X3Y6	Helix-turn-helix transcriptional regulator	NA
UHGV-0040963_71	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-0040963_71	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0040963_71	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0040963_72	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0040963_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0040963_72	UniRef90	UniRef90_Q9EU72	Putative helix-turn-helix protein	NA
UHGV-0040963_72	eggNOG-mapper	1232453.BAIF02000048_gene807	Helix-turn-helix XRE-family like proteins	NA
UHGV-0040963_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0040963_72	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0040963_72	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA