UHGV-0041001

Genome information

Genome length 31,624 bps

CDS count 52

Completeness 94.87% (high-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041001
vOTU ID	vOTU-064624
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_632
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.77
Jumbo phage	No

Genome content
Genome length	31,624 bps
GC content	31.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.79%
Average CDS length	574.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041001_1	UniRef90	UniRef90_A0A6N9L4Y1	XRE family transcriptional regulator	NA
UHGV-0041001_1	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0041001_1	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0041001_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0041001_3	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0041001_3	UniRef90	UniRef90_UPI000E539E62	phage antirepressor KilAC domain-containing protein	NA
UHGV-0041001_3	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-0041001_3	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0041001_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0041001_3	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0041001_3	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0041001_5	PHROG	phrog_585	NA	unknown function
UHGV-0041001_5	UniRef90	UniRef90_UPI001F1D2BA2	NA	NA
UHGV-0041001_5	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0041001_5	Pfam	PF10711	NA	DUF2513
UHGV-0041001_5	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0041001_6	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0041001_7	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-0041001_10	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041001_10	UniRef90	UniRef90_UPI000E42AA27	AAA family ATPase	NA
UHGV-0041001_10	eggNOG-mapper	1504823.CCMM01000008_gene1067	NA	NA
UHGV-0041001_10	Pfam	PF13479	AAA domain	AAA_24
UHGV-0041001_10	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0041001_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0041001_12	UniRef90	UniRef90_UPI00069126B1	siphovirus Gp157 family protein	NA
UHGV-0041001_12	eggNOG-mapper	1504823.CCMM01000008_gene1065	Siphovirus Gp157	NA
UHGV-0041001_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0041001_12	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0041001_13	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0041001_13	Structural annotation	PF05037	NA	NA
UHGV-0041001_14	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0041001_14	UniRef90	UniRef90_UPI000E3FB87B	ERCC4 domain-containing protein	NA
UHGV-0041001_14	eggNOG-mapper	1504823.CCMM01000008_gene1063	NA	NA
UHGV-0041001_14	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0041001_14	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0041001_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0041001_15	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0041001_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0041001_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0041001_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0041001_16	UniRef90	UniRef90_A0A7K3Z8Y2	AAA family ATPase	NA
UHGV-0041001_16	eggNOG-mapper	1504823.CCMM01000008_gene1061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0041001_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0041001_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0041001_16	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0041001_17	Structural annotation	PF17354	NA	NA
UHGV-0041001_18	eggNOG-mapper	1504823.CCMM01000008_gene1059	NA	NA
UHGV-0041001_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0041001_19	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0041001_19	eggNOG-mapper	742823.HMPREF9465_01257	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0041001_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0041001_19	Structural annotation	PF01507, MF_00064, NF002537, COG0175	NA	NA
UHGV-0041001_21	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0041001_21	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0041001_21	eggNOG-mapper	221109.22777829	dUTPase	NA
UHGV-0041001_21	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0041001_21	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0041001_21	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0041001_24	eggNOG-mapper	1123263.AUKY01000072_gene2097	NA	NA
UHGV-0041001_26	PHROG	phrog_6716	NA	unknown function
UHGV-0041001_26	Structural annotation	PF10694	NA	NA
UHGV-0041001_27	Structural annotation	TIGR01636	NA	NA
UHGV-0041001_28	eggNOG-mapper	1235799.C818_04214	NA	NA
UHGV-0041001_29	Structural annotation	PF14524, NF041178	NA	NA
UHGV-0041001_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0041001_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0041001_30	UniRef90	UniRef90_A0A2T3FZ23	Sigma70_r4_2 domain-containing protein	NA
UHGV-0041001_30	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0041001_30	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0041001_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0041001_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041001_30	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0041001_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041001_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0041001_31	UniRef90	UniRef90_A0A2T3FZ43	PBSX family phage terminase large subunit	NA
UHGV-0041001_31	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0041001_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0041001_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0041001_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0041001_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041001_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0041001_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0041001_32	UniRef90	UniRef90_UPI001F061150	phage portal protein	NA
UHGV-0041001_32	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0041001_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0041001_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0041001_33	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0041001_33	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0041001_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0041001_33	COG	COG2369	NA	NA
UHGV-0041001_33	Structural annotation	PF06152	NA	NA
UHGV-0041001_34	eggNOG-mapper	936573.HMPREF1147_1323	NA	NA
UHGV-0041001_34	COG	COG3567	NA	NA
UHGV-0041001_36	PHROG	phrog_30609	NA	unknown function
UHGV-0041001_36	Structural annotation	PF21485	NA	NA
UHGV-0041001_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0041001_37	UniRef90	UniRef90_UPI00142FDD09	phage scaffolding protein	NA
UHGV-0041001_37	eggNOG-mapper	139871.A9D9T0_9VIRU	Phage minor structural protein GP20	NA
UHGV-0041001_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0041001_37	Structural annotation	PF06810	NA	NA
UHGV-0041001_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0041001_38	UniRef90	UniRef90_A0A416DTJ6	Phage capsid protein	NA
UHGV-0041001_38	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0041001_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0041001_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0041001_40	PHROG	phrog_3366	NA	unknown function
UHGV-0041001_40	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0041001_40	Pfam	PF20536	NA	DUF6751
UHGV-0041001_40	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0041001_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0041001_41	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0041001_41	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0041001_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0041001_41	Structural annotation	PF11114	NA	NA
UHGV-0041001_42	PHROG	phrog_3266	tail completion	connector
UHGV-0041001_42	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0041001_42	eggNOG-mapper	1540257.JQMW01000013_gene737	NA	NA
UHGV-0041001_42	Structural annotation	PF12691	NA	NA
UHGV-0041001_43	PHROG	phrog_3099	NA	unknown function
UHGV-0041001_43	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0041001_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0041001_44	Structural annotation	PF10666	NA	NA
UHGV-0041001_45	PHROG	phrog_706	NA	unknown function
UHGV-0041001_45	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0041001_45	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0041001_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0041001_45	Structural annotation	PF06854	NA	NA
UHGV-0041001_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0041001_46	eggNOG-mapper	469596.HMPREF9488_01328	tape measure	NA
UHGV-0041001_46	COG	COG5412	Phage-related protein	NA
UHGV-0041001_47	PHROG	phrog_1194	NA	unknown function
UHGV-0041001_47	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0041001_48	PHROG	phrog_6616	tail protein	tail
UHGV-0041001_48	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0041001_48	Structural annotation	NF033848, COG4926	NA	NA
UHGV-0041001_49	PHROG	phrog_2566	NA	unknown function
UHGV-0041001_50	Structural annotation	PF07761	NA	NA
UHGV-0041001_52	Structural annotation	TIGR04362	NA	NA