UHGV-0041002

Genome information

Genome length 35,085 bps

CDS count 67

Completeness 82.00% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041002
vOTU ID	vOTU-029386
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_634
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.19
Jumbo phage	No

Genome content
Genome length	35,085 bps
GC content	58.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.36%
Average CDS length	487.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041002_1	PHROG	phrog_17147	NA	unknown function
UHGV-0041002_1	UniRef90	UniRef90_A0A0M4N1P7	Unassigned protein	NA
UHGV-0041002_1	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0041002_1	Structural annotation	PF21430	NA	NA
UHGV-0041002_2	PHROG	phrog_28754	NA	unknown function
UHGV-0041002_2	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0041002_2	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0041002_2	Structural annotation	PF18079	NA	NA
UHGV-0041002_3	KOfam	K14059	int; integrase	NA
UHGV-0041002_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0041002_3	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0041002_3	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0041002_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041002_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041002_3	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0041002_4	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-0041002_4	Structural annotation	PF08931	NA	NA
UHGV-0041002_5	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0041002_5	Structural annotation	PF08931	NA	NA
UHGV-0041002_6	eggNOG-mapper	1680.BADO_1227	NA	NA
UHGV-0041002_8	eggNOG-mapper	1435051.BMOU_0220	NA	NA
UHGV-0041002_11	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0041002_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0041002_12	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0041002_12	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0041002_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0041002_13	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-0041002_13	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0041002_13	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0041002_14	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0041002_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0041002_15	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0041002_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0041002_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0041002_16	UniRef90	UniRef90_UPI001CFDE0A5	phage tail tape measure protein	NA
UHGV-0041002_16	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0041002_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0041002_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0041002_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0041002_17	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0041002_17	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0041002_17	Structural annotation	PF08890	NA	NA
UHGV-0041002_18	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0041002_19	PHROG	phrog_2491	major tail protein	tail
UHGV-0041002_19	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0041002_19	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0041002_20	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0041002_20	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0041002_20	Structural annotation	PF06141	NA	NA
UHGV-0041002_21	PHROG	phrog_19109	NA	unknown function
UHGV-0041002_21	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0041002_22	PHROG	phrog_13779	NA	unknown function
UHGV-0041002_22	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0041002_22	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0041002_22	Pfam	PF19586	NA	DUF6093
UHGV-0041002_22	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0041002_23	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0041002_23	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0041002_23	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0041002_23	Pfam	PF09355	NA	Phage_Gp19
UHGV-0041002_23	Structural annotation	PF09355	NA	NA
UHGV-0041002_24	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0041002_25	PHROG	phrog_15682	NA	unknown function
UHGV-0041002_26	PHROG	phrog_212	major head protein	head and packaging
UHGV-0041002_26	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0041002_26	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0041002_26	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0041002_27	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0041002_27	UniRef90	UniRef90_A0A7L6B7M9	NA	NA
UHGV-0041002_27	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0041002_28	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0041002_28	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0041002_28	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0041002_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0041002_29	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0041002_29	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0041002_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0041002_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0041002_30	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0041002_30	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0041002_30	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0041002_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0041002_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0041002_31	PHROG	phrog_226	minor tail protein	tail
UHGV-0041002_31	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0041002_33	PHROG	phrog_908	NA	unknown function
UHGV-0041002_33	UniRef90	UniRef90_A0A3E5HJT8	PhnA protein	NA
UHGV-0041002_33	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0041002_33	Structural annotation	COG0789	NA	NA
UHGV-0041002_34	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0041002_34	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0041002_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0041002_36	UniRef90	UniRef90_UPI001C700079	NA	NA
UHGV-0041002_36	eggNOG-mapper	1680.BADO_1253	NA	NA
UHGV-0041002_36	Pfam	PF11753	NA	DUF3310
UHGV-0041002_37	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041002_37	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0041002_37	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0041002_38	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0041002_42	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0041002_44	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0041002_44	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-0041002_45	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0041002_45	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0041002_45	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0041002_45	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0041002_46	UniRef90	UniRef90_A0A3D0PXF1	Ferredoxin	NA
UHGV-0041002_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041002_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041002_47	UniRef90	UniRef90_A0A087D541	Single-stranded DNA-binding protein	NA
UHGV-0041002_47	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0041002_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041002_47	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0041002_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041002_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041002_47	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0041002_48	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0041002_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0041002_49	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0041002_49	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041002_49	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-0041002_49	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0041002_49	Pfam	PF03837	RecT family	RecT
UHGV-0041002_49	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0041002_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0041002_50	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041002_50	UniRef90	UniRef90_A0A564S1W6	YqaJ domain-containing protein	NA
UHGV-0041002_50	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0041002_50	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0041002_50	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0041002_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0041002_50	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0041002_52	UniRef90	UniRef90_A0A3D0Q161	Molecular chaperone GrpE (Fragment)	NA
UHGV-0041002_53	UniRef90	UniRef90_A0A3E5HJV5	Molecular chaperone GrpE	NA
UHGV-0041002_54	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0041002_55	UniRef90	UniRef90_A0A072MSX1	HTH_17 domain-containing protein	NA
UHGV-0041002_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0041002_55	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0041002_56	UniRef90	UniRef90_A0A6B8LJU6	Hypoyhetical protein	NA
UHGV-0041002_57	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0041002_58	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0041002_58	Structural annotation	PF12989	NA	NA
UHGV-0041002_59	Structural annotation	PF19824, NF009256	NA	NA
UHGV-0041002_61	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0041002_61	UniRef90	UniRef90_A0A174BZI9	The helix-turn-helix motif	NA
UHGV-0041002_61	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0041002_61	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0041002_62	UniRef90	UniRef90_UPI001CFDF36A	anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0041002_63	UniRef90	UniRef90_A0A3E5HJH1	XRE family transcriptional regulator	NA
UHGV-0041002_63	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0041002_63	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0041002_64	PHROG	phrog_87	metallo-protease	other
UHGV-0041002_64	UniRef90	UniRef90_UPI001CF991EA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0041002_64	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0041002_64	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0041002_64	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0041002_65	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-0041002_65	eggNOG-mapper	78346.BRUM_0423	NA	NA
UHGV-0041002_66	PHROG	phrog_18591	NA	unknown function
UHGV-0041002_66	eggNOG-mapper	78346.BRUM_0424	NA	NA
UHGV-0041002_67	eggNOG-mapper	78346.BRUM_0425	NA	NA