UHGV-0041172

Genome information

Genome length 42,154 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041172
vOTU ID	vOTU-044876
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_19_RAJ0022YZ__NODE_1935_length_42222_cov_32.350575
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.37
Jumbo phage	No

Genome content
Genome length	42,154 bps
GC content	55.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.03%
Average CDS length	820.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041172_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0041172_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0041172_2	KOfam	K14059	int; integrase	NA
UHGV-0041172_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0041172_2	UniRef90	UniRef90_UPI0013F5BA77	tyrosine-type recombinase/integrase	NA
UHGV-0041172_2	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0041172_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041172_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041172_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0041172_3	UniRef90	UniRef90_A0A3D3Y4M8	HTH cro/C1-type domain-containing protein	NA
UHGV-0041172_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0041172_3	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0041172_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041172_5	UniRef90	UniRef90_A0A3D5PCB7	Transcriptional regulator	NA
UHGV-0041172_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0041172_5	Pfam	PF08667	BetR domain	BetR
UHGV-0041172_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0041172_6	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0041172_10	PHROG	phrog_4973	NA	unknown function
UHGV-0041172_10	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0041172_10	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0041172_10	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0041172_10	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0041172_12	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041172_12	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0041172_12	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0041172_12	Pfam	PF06378	NA	DUF1071
UHGV-0041172_12	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0041172_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041172_13	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0041172_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0041172_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0041172_14	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0041172_14	Structural annotation	PF05772	NA	NA
UHGV-0041172_15	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0041172_15	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0041172_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0041172_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041172_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041172_17	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0041172_17	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0041172_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041172_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0041172_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041172_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041172_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0041172_18	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0041172_18	UniRef90	UniRef90_A0A6G7Y1V7	YdaU family protein	NA
UHGV-0041172_18	eggNOG-mapper	1449126.JQKL01000003_gene1705	ROK family	NA
UHGV-0041172_18	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0041172_18	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0041172_19	eggNOG-mapper	1444310.JANV01000162_gene1216	NA	NA
UHGV-0041172_21	PHROG	phrog_38832	NA	unknown function
UHGV-0041172_21	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0041172_21	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0041172_23	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0041172_26	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0041172_26	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0041172_26	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0041172_26	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0041172_26	Structural annotation	PF16677	NA	NA
UHGV-0041172_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041172_27	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0041172_27	UniRef90	UniRef90_A0A3D1LE76	Terminase-like family protein	NA
UHGV-0041172_27	eggNOG-mapper	657322.FPR_02290	Terminase-like family	NA
UHGV-0041172_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0041172_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041172_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0041172_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-0041172_28	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0041172_28	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0041172_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0041172_29	PHROG	phrog_4478	peptidase	other
UHGV-0041172_29	UniRef90	UniRef90_UPI001D021C93	ribosomal-processing cysteine protease Prp	NA
UHGV-0041172_29	COG	COG2868	NA	NA
UHGV-0041172_29	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0041172_30	PHROG	phrog_13908	NA	unknown function
UHGV-0041172_30	eggNOG-mapper	1203606.HMPREF1526_02747	NA	NA
UHGV-0041172_31	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0041172_31	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0041172_31	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0041172_31	Pfam	PF13252	NA	DUF4043
UHGV-0041172_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0041172_31	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0041172_32	PHROG	phrog_15239	NA	unknown function
UHGV-0041172_32	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0041172_33	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0041172_33	PHROG	phrog_819	tail protein	tail
UHGV-0041172_33	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0041172_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0041172_33	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0041172_34	PHROG	phrog_37900	NA	unknown function
UHGV-0041172_34	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0041172_34	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0041172_34	Pfam	PF19789	NA	DUF6273
UHGV-0041172_34	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0041172_34	Structural annotation	PF19789, PF07210, PF03785, TIGR03000	NA	NA
UHGV-0041172_35	PHROG	phrog_29409	NA	unknown function
UHGV-0041172_35	UniRef90	UniRef90_UPI001A9AA1DC	isoaspartyl peptidase	NA
UHGV-0041172_37	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0041172_37	PHROG	phrog_30034	NA	unknown function
UHGV-0041172_37	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0041172_37	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0041172_37	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0041172_37	Structural annotation	PF14600	NA	NA
UHGV-0041172_38	PHROG	phrog_937	hemolysin	other
UHGV-0041172_38	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0041172_39	PHROG	phrog_1899	NA	unknown function
UHGV-0041172_39	UniRef90	UniRef90_A0A3D1LBG0	Gp58 domain-containing protein	NA
UHGV-0041172_39	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0041172_39	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0041172_39	Structural annotation	NF038340	NA	NA
UHGV-0041172_40	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0041172_40	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0041172_40	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0041172_41	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-0041172_42	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0041172_42	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0041172_42	UniRef90	UniRef90_A0A3D1LAM6	Helicase ATP-binding domain-containing protein (Fragment)	NA
UHGV-0041172_42	eggNOG-mapper	1235797.C816_04246	SNF2 family N-terminal domain	NA
UHGV-0041172_42	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0041172_42	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0041172_42	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0041172_44	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0041172_44	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-0041172_44	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0041172_44	Pfam	PF14359	NA	DUF4406
UHGV-0041172_44	Structural annotation	PF14359	NA	NA
UHGV-0041172_45	PHROG	phrog_6918	holin	lysis
UHGV-0041172_45	UniRef90	UniRef90_G9YP36	Phage holin, LL-H family	NA
UHGV-0041172_45	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0041172_45	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0041172_45	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0041172_46	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0041172_46	PHROG	phrog_670	endolysin	lysis
UHGV-0041172_46	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041172_46	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-0041172_46	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0041172_46	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0041172_46	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0041172_47	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0041172_47	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA