UHGV-0041403

Genome information

Genome length 45,157 bps

CDS count 55

Completeness 69.81% (medium-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041403
vOTU ID	vOTU-024838
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_21533
BioSample	SAMEA2042836
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.06
Jumbo phage	No

Genome content
Genome length	45,157 bps
GC content	39.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.62%
Average CDS length	747.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041403_5	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0041403_6	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0041403_7	PHROG	phrog_38044	NA	unknown function
UHGV-0041403_7	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-0041403_7	COG	COG4926	Phage-related protein	NA
UHGV-0041403_8	PHROG	phrog_26568	NA	unknown function
UHGV-0041403_8	eggNOG-mapper	435590.BVU_2821	NA	NA
UHGV-0041403_8	Structural annotation	PF02927, PF19266	NA	NA
UHGV-0041403_9	PHROG	phrog_22157	NA	unknown function
UHGV-0041403_9	eggNOG-mapper	435590.BVU_2822	NA	NA
UHGV-0041403_9	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0041403_10	eggNOG-mapper	657309.BXY_08240	NA	NA
UHGV-0041403_10	Pfam	PF12957	NA	DUF3846
UHGV-0041403_10	Structural annotation	PF12957	NA	NA
UHGV-0041403_11	PHROG	phrog_1086	NA	unknown function
UHGV-0041403_11	UniRef90	UniRef90_A0A3E4WHH8	NA	NA
UHGV-0041403_11	eggNOG-mapper	657309.BXY_08260	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0041403_11	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0041403_11	Structural annotation	PF10902	NA	NA
UHGV-0041403_12	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0041403_12	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0041403_12	UniRef90	UniRef90_A0A3E4WHC7	RNA polymerase sigma factor	NA
UHGV-0041403_12	eggNOG-mapper	435590.BVU_2824	Sigma-70, region 4	NA
UHGV-0041403_12	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0041403_12	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0041403_12	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0041403_12	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0041403_12	Structural annotation	PF08281, PF04542, MF_00962, NF008890, COG1595	NA	NA
UHGV-0041403_14	PHROG	phrog_26233	NA	unknown function
UHGV-0041403_14	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-0041403_15	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0041403_15	PHROG	phrog_26705	NA	unknown function
UHGV-0041403_15	UniRef90	UniRef90_A0A1C5NZN8	Phage-related minor tail protein	NA
UHGV-0041403_15	eggNOG-mapper	657309.BXY_08300	Phage-related minor tail protein	NA
UHGV-0041403_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0041403_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0041403_15	Structural annotation	PF10145, MF_04138, TIGR01760, COG5281	NA	NA
UHGV-0041403_16	PHROG	phrog_26299	NA	unknown function
UHGV-0041403_16	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0041403_17	PHROG	phrog_6195	tail protein	tail
UHGV-0041403_17	UniRef90	UniRef90_I8VT13	ABC transporter C family member 12	NA
UHGV-0041403_17	eggNOG-mapper	435590.BVU_2828	NA	NA
UHGV-0041403_18	PHROG	phrog_25857	NA	unknown function
UHGV-0041403_18	eggNOG-mapper	411476.BACOVA_03933	NA	NA
UHGV-0041403_19	PHROG	phrog_24272	NA	unknown function
UHGV-0041403_19	eggNOG-mapper	411476.BACOVA_03932	NA	NA
UHGV-0041403_19	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0041403_20	PHROG	phrog_23418	NA	unknown function
UHGV-0041403_20	eggNOG-mapper	657309.BXY_08350	NA	NA
UHGV-0041403_20	Structural annotation	PF08873	NA	NA
UHGV-0041403_21	PHROG	phrog_26639	NA	unknown function
UHGV-0041403_21	eggNOG-mapper	657309.BXY_08360	NA	NA
UHGV-0041403_22	PHROG	phrog_23080	NA	unknown function
UHGV-0041403_22	eggNOG-mapper	411476.BACOVA_03929	NA	NA
UHGV-0041403_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0041403_23	UniRef90	UniRef90_UPI001EF5C893	phage major capsid protein	NA
UHGV-0041403_23	eggNOG-mapper	411476.BACOVA_03928	Phage capsid family	NA
UHGV-0041403_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0041403_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0041403_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0041403_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0041403_24	KOfam	K06904	NA	NA
UHGV-0041403_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0041403_24	UniRef90	UniRef90_A0A1C5NY92	Phage prohead protease, HK97 family	NA
UHGV-0041403_24	eggNOG-mapper	657309.BXY_08400	Phage prohead protease, HK97 family	NA
UHGV-0041403_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0041403_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0041403_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0041403_25	UniRef90	UniRef90_A0A3E4WH77	Phage portal protein	NA
UHGV-0041403_25	eggNOG-mapper	411476.BACOVA_03926	Phage portal protein	NA
UHGV-0041403_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0041403_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0041403_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041403_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0041403_26	UniRef90	UniRef90_A0A3E4WHH9	PBSX family phage terminase large subunit	NA
UHGV-0041403_26	eggNOG-mapper	411476.BACOVA_03925	Phage terminase large subunit	NA
UHGV-0041403_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0041403_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0041403_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041403_26	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0041403_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0041403_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0041403_27	UniRef90	UniRef90_UPI00195BC217	terminase small subunit	NA
UHGV-0041403_27	eggNOG-mapper	657309.BXY_08430	Terminase small subunit	NA
UHGV-0041403_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0041403_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0041403_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0041403_28	KOfam	K02242	comFC; competence protein ComFC	NA
UHGV-0041403_28	UniRef90	UniRef90_A0A3E4WHD3	Pribosyltran domain-containing protein	NA
UHGV-0041403_28	eggNOG-mapper	657309.BXY_08440	competence protein	NA
UHGV-0041403_28	COG	COG1040	DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain	NA
UHGV-0041403_28	Structural annotation	PF15610, MF_01467, NF008616, COG1040	NA	NA
UHGV-0041403_29	KOfam	K01784	galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2]	NA
UHGV-0041403_29	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0041403_29	UniRef90	UniRef90_A0A1C5NXW9	dTDP-glucose 4,6-dehydratase	NA
UHGV-0041403_29	eggNOG-mapper	657309.BXY_08450	Polysaccharide biosynthesis protein	NA
UHGV-0041403_29	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0041403_29	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0041403_29	Structural annotation	PF04321, MF_01601, TIGR02197, COG0451	NA	NA
UHGV-0041403_31	PHROG	phrog_17622	NA	unknown function
UHGV-0041403_31	eggNOG-mapper	411476.BACOVA_03898	ParB-like nuclease domain	NA
UHGV-0041403_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0041403_32	PHROG	phrog_18176	NA	unknown function
UHGV-0041403_32	eggNOG-mapper	435590.BVU_2843	NA	NA
UHGV-0041403_32	Structural annotation	PF12643, MF_01019, NF001610, COG0140	NA	NA
UHGV-0041403_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0041403_33	PHROG	phrog_18726	NA	unknown function
UHGV-0041403_33	UniRef90	UniRef90_R5VX17	ParB-like partition protein	NA
UHGV-0041403_33	eggNOG-mapper	411476.BACOVA_03894	ParB-like nuclease domain	NA
UHGV-0041403_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0041403_33	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0041403_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0041403_33	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0041403_35	PHROG	phrog_35728	NA	unknown function
UHGV-0041403_35	eggNOG-mapper	1121100.JCM6294_533	NA	NA
UHGV-0041403_35	Pfam	PF20338	NA	DUF6633
UHGV-0041403_35	Structural annotation	PF20338	NA	NA
UHGV-0041403_36	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0041403_36	UniRef90	UniRef90_R5VBX1	NA	NA
UHGV-0041403_36	eggNOG-mapper	411901.BACCAC_01188	NA	NA
UHGV-0041403_36	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0041403_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0041403_36	Structural annotation	PF14297	NA	NA
UHGV-0041403_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0041403_37	PHROG	phrog_11573	NA	unknown function
UHGV-0041403_37	UniRef90	UniRef90_A0A395UME3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0041403_37	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0041403_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0041403_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0041403_38	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0041403_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0041403_38	UniRef90	UniRef90_R5VX13	Putative ATP-dependent helicase	NA
UHGV-0041403_38	eggNOG-mapper	435590.BVU_2855	helicase superfamily c-terminal domain	NA
UHGV-0041403_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0041403_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0041403_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0041403_38	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0041403_39	PHROG	phrog_26490	NA	unknown function
UHGV-0041403_39	eggNOG-mapper	435590.BVU_2857	NA	NA
UHGV-0041403_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0041403_40	eggNOG-mapper	435590.BVU_2858	NA	NA
UHGV-0041403_40	Structural annotation	NF007281	NA	NA
UHGV-0041403_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041403_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041403_41	UniRef90	UniRef90_A0A3E4WHB0	Single-stranded DNA-binding protein	NA
UHGV-0041403_41	eggNOG-mapper	762982.HMPREF9442_00050	Single-stranded DNA-binding protein	NA
UHGV-0041403_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041403_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0041403_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041403_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041403_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0041403_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041403_42	UniRef90	UniRef90_R5W601	PDDEXK_1 domain-containing protein	NA
UHGV-0041403_42	eggNOG-mapper	435590.BVU_2860	NA	NA
UHGV-0041403_42	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0041403_42	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0041403_43	PHROG	phrog_14970	NA	unknown function
UHGV-0041403_43	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0041403_43	eggNOG-mapper	435590.BVU_2861	double-strand break repair protein	NA
UHGV-0041403_43	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0041403_43	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0041403_43	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0041403_44	PHROG	phrog_1934	NA	unknown function
UHGV-0041403_44	UniRef90	UniRef90_UPI0009349315	zinc-finger-containing protein	NA
UHGV-0041403_44	eggNOG-mapper	762982.HMPREF9442_00544	zinc-finger-containing domain	NA
UHGV-0041403_44	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0041403_44	Structural annotation	PF11672	NA	NA
UHGV-0041403_45	PHROG	phrog_35252	NA	unknown function
UHGV-0041403_46	PHROG	phrog_18744	NA	unknown function
UHGV-0041403_46	eggNOG-mapper	357276.EL88_08515	NA	NA
UHGV-0041403_46	Structural annotation	NF040990	NA	NA
UHGV-0041403_47	PHROG	phrog_21219	NA	unknown function
UHGV-0041403_47	eggNOG-mapper	411476.BACOVA_03878	NA	NA
UHGV-0041403_49	Structural annotation	PF11717	NA	NA
UHGV-0041403_51	UniRef90	UniRef90_UPI001EF67A41	helix-turn-helix domain-containing protein	NA
UHGV-0041403_51	eggNOG-mapper	657309.BXY_08820	NA	NA
UHGV-0041403_51	Structural annotation	PF01381, NF007257, COG1476	NA	NA
UHGV-0041403_52	UniRef90	UniRef90_Q38568	Integrase homolog protein	NA
UHGV-0041403_52	eggNOG-mapper	1144313.PMI10_03195	NA	NA
UHGV-0041403_53	eggNOG-mapper	435590.BVU_3690	NA	NA
UHGV-0041403_53	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0041403_54	eggNOG-mapper	435590.BVU_3691	NA	NA
UHGV-0041403_55	PHROG	phrog_8308	NA	unknown function
UHGV-0041403_55	eggNOG-mapper	397287.C807_01694	NA	NA
UHGV-0041403_55	Structural annotation	PF05183	NA	NA