UHGV-0041444

Genome information

Genome length 38,362 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9624

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041444
vOTU ID	vOTU-044889
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_11451
BioSample	SAMEA2042395
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9624
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.83
Jumbo phage	No

Genome content
Genome length	38,362 bps
GC content	39.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.27%
Average CDS length	656.25 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041444_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0041444_1	UniRef90	UniRef90_A0A416GYD3	XRE family transcriptional regulator	NA
UHGV-0041444_1	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0041444_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0041444_1	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0041444_2	UniRef90	UniRef90_A0A416GY85	XRE family transcriptional regulator	NA
UHGV-0041444_2	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0041444_2	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0041444_3	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0041444_5	Structural annotation	PF13835, COG5045	NA	NA
UHGV-0041444_6	COG	COG0675	Transposase	NA
UHGV-0041444_7	PHROG	phrog_6058	NA	unknown function
UHGV-0041444_7	UniRef90	UniRef90_A0A3A9SV11	DNA-binding protein	NA
UHGV-0041444_7	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0041444_7	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0041444_9	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041444_9	UniRef90	UniRef90_A0A4Q5EM79	NA	NA
UHGV-0041444_9	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0041444_9	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0041444_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0041444_9	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0041444_11	PHROG	phrog_4601	NA	unknown function
UHGV-0041444_11	Structural annotation	PF17888	NA	NA
UHGV-0041444_12	PHROG	phrog_15077	NA	unknown function
UHGV-0041444_12	UniRef90	UniRef90_A0A564VJH8	ParB-like nuclease domain protein	NA
UHGV-0041444_12	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0041444_12	Structural annotation	NF038070	NA	NA
UHGV-0041444_13	PHROG	phrog_17690	NA	unknown function
UHGV-0041444_13	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0041444_14	PHROG	phrog_7566	NA	unknown function
UHGV-0041444_14	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0041444_17	PHROG	phrog_6568	NA	unknown function
UHGV-0041444_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0041444_18	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0041444_18	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0041444_18	Structural annotation	PF04545	NA	NA
UHGV-0041444_19	PHROG	phrog_13260	NA	unknown function
UHGV-0041444_19	UniRef90	UniRef90_A0A3R5TCR3	FunZ	NA
UHGV-0041444_19	eggNOG-mapper	572479.Hprae_1054	NA	NA
UHGV-0041444_19	Structural annotation	PF20703, MF_01407, NF001624, COG1474	NA	NA
UHGV-0041444_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0041444_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041444_20	UniRef90	UniRef90_A0A416GYN0	HNH endonuclease	NA
UHGV-0041444_20	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0041444_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0041444_21	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0041444_21	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0041444_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0041444_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0041444_22	UniRef90	UniRef90_A0A416BND4	Terminase	NA
UHGV-0041444_22	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0041444_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0041444_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0041444_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0041444_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0041444_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0041444_23	UniRef90	UniRef90_A0A4Q5EPG9	Phage portal protein	NA
UHGV-0041444_23	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0041444_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0041444_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0041444_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0041444_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0041444_24	KOfam	K06904	NA	NA
UHGV-0041444_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0041444_24	UniRef90	UniRef90_A0A416BNG9	HK97 family phage prohead protease	NA
UHGV-0041444_24	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-0041444_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0041444_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0041444_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0041444_25	UniRef90	UniRef90_A0A4V1YJV8	Phage major capsid protein	NA
UHGV-0041444_25	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0041444_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0041444_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0041444_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0041444_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0041444_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0041444_26	UniRef90	UniRef90_A0A4Q5EPF0	Phage gp6-like head-tail connector protein	NA
UHGV-0041444_26	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-0041444_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0041444_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0041444_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-0041444_27	UniRef90	UniRef90_A0A416BNI7	Head-tail adaptor protein	NA
UHGV-0041444_27	eggNOG-mapper	1408428.JNJP01000182_gene2411	Phage head-tail joining protein	NA
UHGV-0041444_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0041444_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0041444_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0041444_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0041444_28	UniRef90	UniRef90_UPI001D094E82	HK97 gp10 family phage protein	NA
UHGV-0041444_28	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0041444_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0041444_28	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0041444_29	PHROG	phrog_525	NA	unknown function
UHGV-0041444_29	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-0041444_29	Pfam	PF20765	NA	DUF6838
UHGV-0041444_29	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0041444_30	PHROG	phrog_1480	tail sheath	tail
UHGV-0041444_30	UniRef90	UniRef90_A0A4Q5EPI2	Phage tail sheath protein	NA
UHGV-0041444_30	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-0041444_30	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0041444_30	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0041444_30	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0041444_31	PHROG	phrog_365	tail protein	tail
UHGV-0041444_31	UniRef90	UniRef90_A0A4Q5EPL7	Phage portal protein	NA
UHGV-0041444_31	eggNOG-mapper	397288.C806_00067	Phage tail tube protein	NA
UHGV-0041444_31	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0041444_31	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0041444_32	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0041444_32	UniRef90	UniRef90_D4MVP5	Phage XkdN-like protein	NA
UHGV-0041444_32	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0041444_32	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0041444_32	Structural annotation	PF08890	NA	NA
UHGV-0041444_33	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0041444_33	UniRef90	UniRef90_A0A4Q5EPH8	PhageMin_Tail domain-containing protein	NA
UHGV-0041444_33	eggNOG-mapper	398512.JQKC01000009_gene461	tail tape measure protein, TP901	NA
UHGV-0041444_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0041444_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0041444_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0041444_34	PHROG	phrog_380	endolysin	lysis
UHGV-0041444_34	UniRef90	UniRef90_A0A4Q5EPF9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0041444_34	eggNOG-mapper	1437363.A0A090C751_9CAUD	lytic transglycosylase activity	NA
UHGV-0041444_34	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0041444_35	PHROG	phrog_400	tail protein	tail
UHGV-0041444_35	UniRef90	UniRef90_A0A4V1YJV9	CHAP domain-containing protein	NA
UHGV-0041444_35	eggNOG-mapper	1408324.JNJK01000006_gene1393	NLP P60 protein	NA
UHGV-0041444_35	Pfam	PF05257	CHAP domain	CHAP
UHGV-0041444_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0041444_35	Structural annotation	PF14594, PF01551, NF033848, NF040883, COG4379	NA	NA
UHGV-0041444_36	UniRef90	UniRef90_UPI001D0694F4	NA	NA
UHGV-0041444_37	PHROG	phrog_120	baseplate protein	tail
UHGV-0041444_37	UniRef90	UniRef90_A0A4Q5EPQ4	NA	NA
UHGV-0041444_37	eggNOG-mapper	1095750.HMPREF9970_2281	NA	NA
UHGV-0041444_37	Pfam	PF10934	NA	DUF2634
UHGV-0041444_37	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0041444_37	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0041444_38	PHROG	phrog_1608	tail protein	tail
UHGV-0041444_38	UniRef90	UniRef90_A0A4Q5EPG4	Baseplate_J domain-containing protein	NA
UHGV-0041444_38	eggNOG-mapper	1408324.JNJK01000006_gene1396	Baseplate J-like protein	NA
UHGV-0041444_38	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0041444_38	COG	COG3299	NA	NA
UHGV-0041444_38	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0041444_39	PHROG	phrog_521	tail protein	tail
UHGV-0041444_39	UniRef90	UniRef90_A0A4Q5EPM9	NA	NA
UHGV-0041444_39	eggNOG-mapper	1089548.KI783301_gene2598	NA	NA
UHGV-0041444_39	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0041444_39	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0041444_39	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0041444_40	PHROG	phrog_11541	NA	unknown function
UHGV-0041444_40	eggNOG-mapper	220668.lp_3323	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0041444_40	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0041444_40	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0041444_42	UniRef90	UniRef90_UPI0018AC3B89	M48 family metalloprotease	NA
UHGV-0041444_43	Structural annotation	COG1996	NA	NA
UHGV-0041444_44	UniRef90	UniRef90_UPI0013B3ACC1	ABC transporter ATP-binding protein	NA
UHGV-0041444_44	eggNOG-mapper	1121895.Q765_12460	NA	NA
UHGV-0041444_44	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0041444_46	PHROG	phrog_1863	NA	unknown function
UHGV-0041444_46	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0041444_47	PHROG	phrog_1129	holin	lysis
UHGV-0041444_47	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0041444_47	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0041444_47	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0041444_47	Structural annotation	PF16079	NA	NA
UHGV-0041444_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0041444_48	PHROG	phrog_3088	amidase	lysis
UHGV-0041444_48	UniRef90	UniRef90_A0A416QWS5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0041444_48	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0041444_48	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0041444_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0041444_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0041444_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041444_48	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-0041444_49	KOfam	K14059	int; integrase	NA
UHGV-0041444_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0041444_49	UniRef90	UniRef90_A0A416GYP7	Site-specific integrase	NA
UHGV-0041444_49	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0041444_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0041444_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041444_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041444_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0041444_50	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0041444_50	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0041444_50	UniRef90	UniRef90_A0A4Q5EM50	Exonuclease	NA
UHGV-0041444_50	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0041444_50	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0041444_50	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0041444_50	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0041444_50	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0041444_50	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0041444_50	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0041444_52	PHROG	phrog_87	metallo-protease	other
UHGV-0041444_52	UniRef90	UniRef90_UPI001D02322C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0041444_52	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0041444_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0041444_52	Structural annotation	PF06114, COG2856	NA	NA