UHGV-0041450

Genome information

Genome length 39,205 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9375

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041450
vOTU ID	vOTU-069234
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_11441
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9375
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.61
Jumbo phage	No

Genome content
Genome length	39,205 bps
GC content	27.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.30%
Average CDS length	662.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041450_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0041450_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0041450_1	UniRef90	UniRef90_R6KJX5	DNA adenine methylase	NA
UHGV-0041450_1	eggNOG-mapper	1280692.AUJL01000025_gene2087	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0041450_1	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0041450_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0041450_1	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0041450_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-0041450_1	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0041450_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0041450_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041450_2	UniRef90	UniRef90_R6KWA6	Transcriptional regulator XRE family	NA
UHGV-0041450_2	eggNOG-mapper	431943.CKL_1914	TRANSCRIPTIONal	NA
UHGV-0041450_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041450_2	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0041450_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0041450_4	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0041450_4	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0041450_4	UniRef90	UniRef90_UPI00115CF038	ParM/StbA family protein	NA
UHGV-0041450_4	eggNOG-mapper	536233.CLO_2539	cell division	NA
UHGV-0041450_4	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0041450_4	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0041450_4	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0041450_5	UniRef90	UniRef90_R6KJP5	HTH merR-type domain-containing protein	NA
UHGV-0041450_8	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0041450_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041450_8	UniRef90	UniRef90_UPI000A58161B	helix-turn-helix domain-containing protein	NA
UHGV-0041450_8	eggNOG-mapper	632245.CLP_2588	NA	NA
UHGV-0041450_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0041450_8	Structural annotation	PF07106, MF_01177, NF040642, COG0640	NA	NA
UHGV-0041450_10	PHROG	phrog_2277	NA	unknown function
UHGV-0041450_10	UniRef90	UniRef90_A0A0C1U3M4	Putative nicotinate phosphoribosyltransferase	NA
UHGV-0041450_10	eggNOG-mapper	1567012.A0A0A7RTH9_9VIRU	NA	NA
UHGV-0041450_11	PHROG	phrog_19381	NA	unknown function
UHGV-0041450_11	eggNOG-mapper	314278.NB231_00015	NA	NA
UHGV-0041450_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0041450_13	PHROG	phrog_3088	amidase	lysis
UHGV-0041450_13	UniRef90	UniRef90_A0A8I0A635	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041450_13	eggNOG-mapper	457396.CSBG_00241	Ami_2	NA
UHGV-0041450_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0041450_13	Pfam	PF01206	Sulfurtransferase TusA	TusA
UHGV-0041450_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041450_14	PHROG	phrog_199	holin	lysis
UHGV-0041450_14	UniRef90	UniRef90_A0A8I0A6Y0	Phage holin family protein	NA
UHGV-0041450_14	eggNOG-mapper	398512.JQKC01000003_gene5035	toxin secretion phage lysis holin	NA
UHGV-0041450_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0041450_14	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0041450_14	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0041450_14	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0041450_15	KOfam	K13663	gumF; acyltransferase [EC:2.3.1.-]	NA
UHGV-0041450_15	UniRef90	UniRef90_A0A0H3IZ10	Acyltransferase 3	NA
UHGV-0041450_15	eggNOG-mapper	1262449.CP6013_0798	Acyltransferase family	NA
UHGV-0041450_15	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0041450_15	COG	COG3274	Surface polysaccharide O-acyltransferase WecH	NA
UHGV-0041450_15	Structural annotation	PF01757, MF_01949, NF000033, COG3274	NA	NA
UHGV-0041450_16	eggNOG-mapper	1274374.CBLK010000063_gene801	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0041450_16	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0041450_17	PHROG	phrog_16573	NA	unknown function
UHGV-0041450_17	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0041450_17	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0041450_17	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0041450_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0041450_18	UniRef90	UniRef90_UPI00164C43B2	phage tail protein	NA
UHGV-0041450_18	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0041450_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0041450_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0041450_18	COG	COG4926	Phage-related protein	NA
UHGV-0041450_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0041450_19	UniRef90	UniRef90_UPI000DD01D50	phage tail family protein	NA
UHGV-0041450_19	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0041450_19	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0041450_19	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0041450_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0041450_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0041450_20	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0041450_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0041450_20	UniRef90	UniRef90_UPI00164B849B	phage tail tape measure protein	NA
UHGV-0041450_20	eggNOG-mapper	1151292.QEW_0351	Phage-related minor tail protein	NA
UHGV-0041450_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0041450_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0041450_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0041450_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0041450_21	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0041450_22	PHROG	phrog_88	major tail protein	tail
UHGV-0041450_22	UniRef90	UniRef90_B1V2P3	Phage major tail protein, Phi13 family	NA
UHGV-0041450_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0041450_22	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0041450_23	PHROG	phrog_78	tail terminator	connector
UHGV-0041450_23	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0041450_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0041450_24	UniRef90	UniRef90_UPI00164C9F08	HK97 gp10 family phage protein	NA
UHGV-0041450_24	eggNOG-mapper	1476973.JMMB01000007_gene1766	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0041450_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0041450_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0041450_24	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0041450_25	PHROG	phrog_11176	head-tail adaptor	connector
UHGV-0041450_25	UniRef90	UniRef90_UPI00164ACD7E	phage head closure protein	NA
UHGV-0041450_25	eggNOG-mapper	1347392.CCEZ01000045_gene13	NA	NA
UHGV-0041450_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0041450_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0041450_25	Structural annotation	PF05521, PF07405, TIGR01563, COG5614	NA	NA
UHGV-0041450_26	PHROG	phrog_749	NA	unknown function
UHGV-0041450_26	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0041450_26	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0041450_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0041450_27	UniRef90	UniRef90_UPI00164AB0C3	phage major capsid protein	NA
UHGV-0041450_27	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0041450_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0041450_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0041450_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0041450_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0041450_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0041450_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0041450_28	UniRef90	UniRef90_A0A316S6S6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0041450_28	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0041450_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0041450_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0041450_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0041450_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0041450_29	UniRef90	UniRef90_UPI00164CC1C1	phage portal protein	NA
UHGV-0041450_29	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0041450_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0041450_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0041450_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0041450_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0041450_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0041450_30	UniRef90	UniRef90_UPI00164CCF79	terminase large subunit	NA
UHGV-0041450_30	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0041450_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0041450_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0041450_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0041450_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0041450_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0041450_31	UniRef90	UniRef90_UPI00164B2843	RNA polymerase subunit sigma-70	NA
UHGV-0041450_31	eggNOG-mapper	1307436.PBF_22053	NA	NA
UHGV-0041450_31	COG	COG5484	NA	NA
UHGV-0041450_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0041450_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041450_32	UniRef90	UniRef90_UPI00164ABAC9	HNH endonuclease	NA
UHGV-0041450_32	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0041450_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0041450_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0041450_33	PHROG	phrog_1315	NA	unknown function
UHGV-0041450_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0041450_34	UniRef90	UniRef90_A0A1G9I4W9	Sigma-70, region 4	NA
UHGV-0041450_34	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0041450_34	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0041450_34	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0041450_35	PHROG	phrog_25509	NA	unknown function
UHGV-0041450_35	eggNOG-mapper	1414720.CBYM010000002_gene580	NA	NA
UHGV-0041450_36	UniRef90	UniRef90_UPI0016255B8A	BC1881 family protein	NA
UHGV-0041450_36	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0041450_36	Structural annotation	NF033495	NA	NA
UHGV-0041450_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0041450_38	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0041450_38	UniRef90	UniRef90_R6LLI0	ParB protein	NA
UHGV-0041450_38	eggNOG-mapper	1211817.CCAT010000008_gene925	Belongs to the ParB family	NA
UHGV-0041450_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0041450_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0041450_38	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0041450_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0041450_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0041450_41	UniRef90	UniRef90_R6KWQ8	Soj protein	NA
UHGV-0041450_41	eggNOG-mapper	1235792.C808_00611	AAA domain	NA
UHGV-0041450_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0041450_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0041450_41	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0041450_42	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041450_42	UniRef90	UniRef90_A0A2X3C4B1	NA	NA
UHGV-0041450_42	eggNOG-mapper	1196322.A370_05734	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0041450_42	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-0041450_42	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0041450_42	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0041450_42	Structural annotation	PF01710, NF040595, COG5147	NA	NA
UHGV-0041450_43	PHROG	phrog_824	NA	unknown function
UHGV-0041450_43	UniRef90	UniRef90_R6G481	VRR-NUC domain protein	NA
UHGV-0041450_43	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-0041450_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0041450_43	Structural annotation	PF08774	NA	NA
UHGV-0041450_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041450_44	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0041450_44	Structural annotation	PF21578	NA	NA
UHGV-0041450_46	UniRef90	UniRef90_R6KKT6	Helix-turn-helix domain protein	NA
UHGV-0041450_46	eggNOG-mapper	641107.CDLVIII_4477	Helix-turn-helix XRE-family like proteins	NA
UHGV-0041450_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041450_49	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0041450_49	Structural annotation	PF09388	NA	NA
UHGV-0041450_52	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0041450_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041450_52	UniRef90	UniRef90_R6GPR6	DNA-binding helix-turn-helix protein	NA
UHGV-0041450_52	eggNOG-mapper	1414720.CBYM010000002_gene594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0041450_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041450_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0041450_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0041450_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0041450_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0041450_53	UniRef90	UniRef90_R6LMX0	Resolvase family protein	NA
UHGV-0041450_53	eggNOG-mapper	1443122.Z958_07465	resolvase	NA
UHGV-0041450_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0041450_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0041450_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0041450_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0041450_53	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA