UHGV-0041464

Genome information

Genome length 40,861 bps

CDS count 50

Completeness 98.36% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041464
vOTU ID	vOTU-064229
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3873
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.62
Jumbo phage	No

Genome content
Genome length	40,861 bps
GC content	30.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	86.34%
Average CDS length	706.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041464_1	PHROG	phrog_9525	tail fiber protein	tail
UHGV-0041464_1	UniRef90	UniRef90_UPI00038CE615	tail fiber protein	NA
UHGV-0041464_1	eggNOG-mapper	1408823.AXUS01000032_gene2948	acid phosphatase activity	NA
UHGV-0041464_1	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0041464_2	PHROG	phrog_7809	tail fiber protein	tail
UHGV-0041464_2	UniRef90	UniRef90_A0A0A8WET9	Tail fiber protein	NA
UHGV-0041464_2	eggNOG-mapper	1582149.A0A0A8WJ53_9CAUD	NA	NA
UHGV-0041464_3	PHROG	phrog_4884	holin	lysis
UHGV-0041464_3	UniRef90	UniRef90_T3DQK8	Putative holin	NA
UHGV-0041464_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0041464_4	PHROG	phrog_9482	NA	unknown function
UHGV-0041464_4	UniRef90	UniRef90_A0A8B6IJC6	Cell wall hydrolase (Endolysin)	NA
UHGV-0041464_4	eggNOG-mapper	1151292.QEW_4517	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041464_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0041464_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041464_4	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0041464_5	UniRef90	UniRef90_UPI001E5C964D	LLM class flavin-dependent oxidoreductase	NA
UHGV-0041464_5	eggNOG-mapper	1415774.U728_530	NA	NA
UHGV-0041464_5	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0041464_6	PHROG	phrog_6775	NA	unknown function
UHGV-0041464_7	PHROG	phrog_6809	NA	unknown function
UHGV-0041464_8	PHROG	phrog_4337	NA	unknown function
UHGV-0041464_9	PHROG	phrog_4021	NA	unknown function
UHGV-0041464_10	PHROG	phrog_4741	NA	unknown function
UHGV-0041464_10	eggNOG-mapper	1476973.JMMB01000005_gene3488	NA	NA
UHGV-0041464_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0041464_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0041464_11	UniRef90	UniRef90_A0A8B6IL03	Sporulation initiation inhibitor	NA
UHGV-0041464_11	eggNOG-mapper	1437363.A0A090C6M6_9CAUD	NA	NA
UHGV-0041464_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0041464_12	PHROG	phrog_2329	NA	unknown function
UHGV-0041464_12	UniRef90	UniRef90_UPI0010340FEB	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0041464_12	eggNOG-mapper	1227268.HMPREF1552_01579	NA	NA
UHGV-0041464_12	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-0041464_13	PHROG	phrog_738	NA	unknown function
UHGV-0041464_13	UniRef90	UniRef90_T3D7L9	Putative membrane protein	NA
UHGV-0041464_14	PHROG	phrog_5173	NA	unknown function
UHGV-0041464_14	UniRef90	UniRef90_A0A0A8WER7	Putative DNAse/helicase protein	NA
UHGV-0041464_14	eggNOG-mapper	1151292.QEW_4562	Type III restriction enzyme res subunit	NA
UHGV-0041464_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0041464_14	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0041464_15	PHROG	phrog_6335	NA	unknown function
UHGV-0041464_16	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0041464_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041464_16	UniRef90	UniRef90_A0A0A8WIL9	CI phage repressor	NA
UHGV-0041464_16	eggNOG-mapper	1151292.QEW_4561	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0041464_16	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0041464_16	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0041464_16	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0041464_17	PHROG	phrog_6407	NA	unknown function
UHGV-0041464_18	PHROG	phrog_4206	NA	unknown function
UHGV-0041464_19	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0041464_19	UniRef90	UniRef90_F6K8P1	Replication terminator protein	NA
UHGV-0041464_19	eggNOG-mapper	1032362.F6K8P1_9CAUD	NA	NA
UHGV-0041464_20	PHROG	phrog_1029	NA	unknown function
UHGV-0041464_20	eggNOG-mapper	1032362.F6K8P2_9CAUD	NA	NA
UHGV-0041464_20	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0041464_21	PHROG	phrog_2065	NA	unknown function
UHGV-0041464_22	PHROG	phrog_5442	NA	unknown function
UHGV-0041464_23	PHROG	phrog_2569	NA	unknown function
UHGV-0041464_24	PHROG	phrog_3221	NA	unknown function
UHGV-0041464_24	UniRef90	UniRef90_F6K8P6	NA	NA
UHGV-0041464_24	eggNOG-mapper	272563.CD630_09240	NA	NA
UHGV-0041464_24	Pfam	PF12677	NA	DUF3797
UHGV-0041464_24	Structural annotation	PF12677, MF_00757	NA	NA
UHGV-0041464_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041464_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041464_25	UniRef90	UniRef90_F6K8P8	Single-stranded DNA-binding protein	NA
UHGV-0041464_25	eggNOG-mapper	864178.E2ELN0_9CAUD	Single-strand binding protein family	NA
UHGV-0041464_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041464_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0041464_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041464_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0041464_26	PHROG	phrog_1310	NA	unknown function
UHGV-0041464_26	UniRef90	UniRef90_T3D625	NUMOD1 domain protein	NA
UHGV-0041464_26	eggNOG-mapper	1522092.A0A090D844_9CAUD	NA	NA
UHGV-0041464_27	PHROG	phrog_7197	NA	unknown function
UHGV-0041464_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0041464_28	UniRef90	UniRef90_A0A0A8WJB1	Sigma70/sigmaF-like protein	NA
UHGV-0041464_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0041464_29	PHROG	phrog_216	integrase	integration and excision
UHGV-0041464_29	UniRef90	UniRef90_A0A0A8WE94	Integrase	NA
UHGV-0041464_29	eggNOG-mapper	1151292.QEW_4544	PFAM Phage integrase family	NA
UHGV-0041464_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041464_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041464_29	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0041464_30	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0041464_30	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0041464_30	UniRef90	UniRef90_A0A0A8WIK3	Recombinase/resolvase	NA
UHGV-0041464_30	eggNOG-mapper	272563.CD630_35780	Resolvase, N terminal domain	NA
UHGV-0041464_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0041464_30	Pfam	PF18010	Cry35Ab1 HTH C-terminal domain	HTH_49
UHGV-0041464_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0041464_30	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0041464_31	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0041464_31	UniRef90	UniRef90_A0A0A8WEP9	Terminase small subunit	NA
UHGV-0041464_31	eggNOG-mapper	1151292.QEW_4542	DNA packaging	NA
UHGV-0041464_31	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0041464_31	COG	COG5484	NA	NA
UHGV-0041464_31	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0041464_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041464_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0041464_32	UniRef90	UniRef90_A0A0A8WJ87	Terminase large subunit	NA
UHGV-0041464_32	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-0041464_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0041464_32	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0041464_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0041464_33	UniRef90	UniRef90_A0A0A8WE65	Minor capsid protein	NA
UHGV-0041464_33	eggNOG-mapper	1032362.F6K8Q7_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0041464_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0041464_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0041464_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0041464_34	UniRef90	UniRef90_T3DPL3	Phage minor capsid 2 family protein	NA
UHGV-0041464_34	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-0041464_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0041464_34	COG	COG2369	NA	NA
UHGV-0041464_34	Structural annotation	PF06152	NA	NA
UHGV-0041464_35	PHROG	phrog_419	NA	unknown function
UHGV-0041464_35	UniRef90	UniRef90_F6K8Q9	Phage-related protein	NA
UHGV-0041464_35	Structural annotation	PF14083	NA	NA
UHGV-0041464_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0041464_36	UniRef90	UniRef90_A0A0A8WJ89	Scaffolding protein	NA
UHGV-0041464_36	eggNOG-mapper	1151292.QEW_4536	NA	NA
UHGV-0041464_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0041464_36	Structural annotation	PF06810	NA	NA
UHGV-0041464_37	PHROG	phrog_247	major head protein	head and packaging
UHGV-0041464_37	UniRef90	UniRef90_A0A0A8WE70	Phage coat protein	NA
UHGV-0041464_37	eggNOG-mapper	1151292.QEW_4535	NA	NA
UHGV-0041464_37	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0041464_37	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0041464_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0041464_38	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0041464_39	PHROG	phrog_3366	NA	unknown function
UHGV-0041464_39	eggNOG-mapper	1151292.QEW_4533	NA	NA
UHGV-0041464_39	Pfam	PF20536	NA	DUF6751
UHGV-0041464_39	Structural annotation	PF20536	NA	NA
UHGV-0041464_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0041464_40	UniRef90	UniRef90_UPI001BD17151	minor capsid protein	NA
UHGV-0041464_40	eggNOG-mapper	545697.HMPREF0216_02853	Minor capsid protein	NA
UHGV-0041464_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0041464_40	Structural annotation	PF11114	NA	NA
UHGV-0041464_41	PHROG	phrog_3266	tail completion	connector
UHGV-0041464_41	UniRef90	UniRef90_UPI00189B97A4	chloramphenicol resistance protein	NA
UHGV-0041464_41	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-0041464_41	Structural annotation	PF12691	NA	NA
UHGV-0041464_42	PHROG	phrog_3099	NA	unknown function
UHGV-0041464_42	UniRef90	UniRef90_A0A0A8WJB7	S-l_SbsC_C domain-containing protein	NA
UHGV-0041464_42	eggNOG-mapper	632245.CLP_1654	NA	NA
UHGV-0041464_42	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0041464_42	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0041464_43	PHROG	phrog_4450	NA	unknown function
UHGV-0041464_43	UniRef90	UniRef90_UPI001A8FEF87	AP endonuclease	NA
UHGV-0041464_43	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0041464_43	Pfam	PF20378	NA	DUF6673
UHGV-0041464_43	Structural annotation	PF20378	NA	NA
UHGV-0041464_44	PHROG	phrog_706	NA	unknown function
UHGV-0041464_44	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-0041464_44	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0041464_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0041464_44	Structural annotation	PF06854	NA	NA
UHGV-0041464_45	PHROG	phrog_7974	NA	unknown function
UHGV-0041464_45	UniRef90	UniRef90_A0A0A8WEQ6	NA	NA
UHGV-0041464_45	eggNOG-mapper	272563.CD630_04390	NA	NA
UHGV-0041464_45	Pfam	PF14020	NA	DUF4236
UHGV-0041464_46	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0041464_46	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0041464_46	UniRef90	UniRef90_UPI001D0F6712	phage tail tape measure protein	NA
UHGV-0041464_46	eggNOG-mapper	1032362.F6K8S0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0041464_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0041464_46	Pfam	PF12153	LPS binding domain of CAP18 (C terminal)	CAP18_C
UHGV-0041464_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0041464_47	UniRef90	UniRef90_A0A0A8WJB9	Tail component protein	NA
UHGV-0041464_47	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-0041464_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0041464_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0041464_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0041464_48	PHROG	phrog_8687	tail protein with peptidase activity	other
UHGV-0041464_48	UniRef90	UniRef90_A0A0A8WEA5	Tail protein/endopeptidase	NA
UHGV-0041464_48	eggNOG-mapper	1582149.A0A0A8WIC9_9CAUD	peptidoglycan catabolic process	NA
UHGV-0041464_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0041464_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0041464_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0041464_49	PHROG	phrog_6130	NA	unknown function
UHGV-0041464_50	PHROG	phrog_9525	tail fiber protein	tail
UHGV-0041464_50	UniRef90	UniRef90_UPI00038D3FF7	BppU family phage baseplate upper protein	NA
UHGV-0041464_50	eggNOG-mapper	1582149.A0A0A8WEI2_9CAUD	signal transducer activity	NA
UHGV-0041464_50	Pfam	PF10651	BppU N-terminal domain	BppU_N