UHGV-0041509

Genome information

Genome length 21,765 bps

CDS count 30

Completeness 56.36% (medium-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041509
vOTU ID	vOTU-036581
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_8428
BioSample	SAMEA2042204
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.49
Jumbo phage	No

Genome content
Genome length	21,765 bps
GC content	42.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	90.91%
Average CDS length	665.80 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041509_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0041509_2	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0041509_2	eggNOG-mapper	394503.Ccel_3048	Phage minor capsid protein 2	NA
UHGV-0041509_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0041509_2	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0041509_2	COG	COG2733	NA	NA
UHGV-0041509_2	Structural annotation	PF06152	NA	NA
UHGV-0041509_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0041509_3	UniRef90	UniRef90_R6E386	Phage minor capsid protein	NA
UHGV-0041509_3	eggNOG-mapper	1415775.U729_2601	NA	NA
UHGV-0041509_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0041509_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041509_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0041509_4	UniRef90	UniRef90_UPI00058B65A5	terminase	NA
UHGV-0041509_4	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0041509_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041509_4	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0041509_6	Structural annotation	PF09055	NA	NA
UHGV-0041509_7	Structural annotation	TIGR01636	NA	NA
UHGV-0041509_9	PHROG	phrog_824	NA	unknown function
UHGV-0041509_9	UniRef90	UniRef90_R6DT92	VRR-NUC domain-containing protein	NA
UHGV-0041509_9	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-0041509_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0041509_9	Structural annotation	PF08774	NA	NA
UHGV-0041509_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041509_10	eggNOG-mapper	561177.ANHYDRO_01389	NA	NA
UHGV-0041509_10	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0041509_11	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0041509_11	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0041509_11	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0041509_12	PHROG	phrog_24368	NA	unknown function
UHGV-0041509_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0041509_13	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0041509_13	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0041509_13	Pfam	PF14359	NA	DUF4406
UHGV-0041509_13	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0041509_15	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0041509_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0041509_15	UniRef90	UniRef90_R6E553	DNA methylase family protein	NA
UHGV-0041509_15	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0041509_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0041509_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0041509_15	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0041509_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0041509_21	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0041509_21	UniRef90	UniRef90_R6DVU6	ParB-like partition protein	NA
UHGV-0041509_21	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0041509_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0041509_21	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0041509_21	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0041509_21	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0041509_22	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0041509_24	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0041509_24	UniRef90	UniRef90_R6DVV1	Conserved domain protein	NA
UHGV-0041509_24	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0041509_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0041509_24	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0041509_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0041509_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041509_25	UniRef90	UniRef90_R6DTB4	Peptidase S24-like protein	NA
UHGV-0041509_25	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0041509_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041509_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0041509_25	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0041509_26	PHROG	phrog_1914	NA	unknown function
UHGV-0041509_26	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0041509_26	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0041509_26	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0041509_26	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0041509_26	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0041509_27	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0041509_27	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0041509_27	Structural annotation	PF06152	NA	NA
UHGV-0041509_28	KOfam	K14059	int; integrase	NA
UHGV-0041509_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0041509_28	UniRef90	UniRef90_R6DVW0	Phage integrase	NA
UHGV-0041509_28	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0041509_28	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0041509_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041509_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041509_28	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0041509_29	KOfam	K00384	trxB, TRR; thioredoxin reductase (NADPH) [EC:1.8.1.9]	NA
UHGV-0041509_29	PHROG	phrog_6397	ribonucleotide reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0041509_29	UniRef90	UniRef90_R6E582	Thioredoxin reductase	NA
UHGV-0041509_29	eggNOG-mapper	877415.JNJQ01000039_gene2591	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family	NA
UHGV-0041509_29	Pfam	PF07992	Pyridine nucleotide-disulphide oxidoreductase	Pyr_redox_2
UHGV-0041509_29	COG	COG0492	Thioredoxin reductase	NA
UHGV-0041509_29	Structural annotation	PF07992, MF_01685, TIGR01292, COG0492	NA	NA
UHGV-0041509_30	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0041509_30	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0041509_30	UniRef90	UniRef90_R5YF65	ATP-cone domain-containing protein	NA
UHGV-0041509_30	eggNOG-mapper	180332.JTGN01000002_gene5847	Ribonucleoside-triphosphate reductase	NA
UHGV-0041509_30	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0041509_30	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0041509_30	NCBIFam	NF006126.0	ribonucleoside triphosphate reductase	NA
UHGV-0041509_30	COG	COG0695	Glutaredoxin	NA