UHGV-0041754

Genome information

Genome length 38,856 bps

CDS count 71

Completeness 93.59% (high-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041754
vOTU ID	vOTU-070427
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_17620
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	86.73
Jumbo phage	No

Genome content
Genome length	38,856 bps
GC content	45.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.00%
Average CDS length	508.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041754_1	KOfam	K14954	lprG; lipoprotein LprG	NA
UHGV-0041754_1	eggNOG-mapper	1203606.HMPREF1526_02595	NA	NA
UHGV-0041754_1	Pfam	PF20316	NA	DUF6612
UHGV-0041754_3	Structural annotation	COG4451	NA	NA
UHGV-0041754_4	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0041754_5	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0041754_6	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0041754_6	UniRef90	UniRef90_R6Q814	NlpC/P60 domain-containing protein	NA
UHGV-0041754_6	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0041754_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0041754_7	PHROG	phrog_36029	NA	unknown function
UHGV-0041754_7	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0041754_7	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0041754_8	eggNOG-mapper	428125.CLOLEP_01418	NA	NA
UHGV-0041754_13	PHROG	phrog_30508	NA	unknown function
UHGV-0041754_14	PHROG	phrog_521	tail protein	tail
UHGV-0041754_14	UniRef90	UniRef90_UPI001A9C8D3A	NA	NA
UHGV-0041754_14	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-0041754_14	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0041754_14	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0041754_14	Structural annotation	PF10076, PF12571, TIGR02242, COG3778	NA	NA
UHGV-0041754_15	PHROG	phrog_6	baseplate protein	tail
UHGV-0041754_15	UniRef90	UniRef90_A0A1Y4L386	Baseplate J protein	NA
UHGV-0041754_15	eggNOG-mapper	742738.HMPREF9460_02531	Baseplate J-like protein	NA
UHGV-0041754_15	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0041754_15	COG	COG3299	NA	NA
UHGV-0041754_15	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0041754_16	PHROG	phrog_26910	NA	unknown function
UHGV-0041754_16	eggNOG-mapper	1031288.AXAA01000044_gene1983	NA	NA
UHGV-0041754_16	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0041754_16	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0041754_17	PHROG	phrog_120	baseplate protein	tail
UHGV-0041754_17	UniRef90	UniRef90_UPI00164C7E68	NA	NA
UHGV-0041754_17	eggNOG-mapper	742738.HMPREF9460_02530	NA	NA
UHGV-0041754_17	Pfam	PF10934	NA	DUF2634
UHGV-0041754_17	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0041754_17	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0041754_18	PHROG	phrog_579	NA	unknown function
UHGV-0041754_18	UniRef90	UniRef90_UPI001D0F2442	NA	NA
UHGV-0041754_18	eggNOG-mapper	642492.Clole_2743	NA	NA
UHGV-0041754_18	Pfam	PF10844	NA	DUF2577
UHGV-0041754_18	Structural annotation	PF10844, COG0186	NA	NA
UHGV-0041754_19	KOfam	K06905	NA	NA
UHGV-0041754_19	PHROG	phrog_400	tail protein	tail
UHGV-0041754_19	eggNOG-mapper	742738.HMPREF9460_02528	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0041754_19	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0041754_19	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0041754_20	PHROG	phrog_380	endolysin	lysis
UHGV-0041754_20	UniRef90	UniRef90_UPI000B989465	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0041754_20	eggNOG-mapper	742738.HMPREF9460_02527	LysM domain	NA
UHGV-0041754_20	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0041754_20	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0041754_21	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0041754_21	UniRef90	UniRef90_UPI001A9A87F9	tape measure protein	NA
UHGV-0041754_21	eggNOG-mapper	742738.HMPREF9460_02526	tape measure	NA
UHGV-0041754_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0041754_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0041754_21	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0041754_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0041754_22	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0041754_22	UniRef90	UniRef90_A0A174CUN9	Phage XkdN-like protein	NA
UHGV-0041754_22	eggNOG-mapper	742738.HMPREF9460_02524	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0041754_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0041754_22	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0041754_23	PHROG	phrog_365	tail protein	tail
UHGV-0041754_23	UniRef90	UniRef90_A0A174V246	Phage-like element PBSX protein xkdM	NA
UHGV-0041754_23	eggNOG-mapper	742738.HMPREF9460_02523	Phage tail tube protein	NA
UHGV-0041754_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0041754_23	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0041754_24	PHROG	phrog_279	tail sheath	tail
UHGV-0041754_24	UniRef90	UniRef90_A0A1Y4L2W8	Phage tail sheath protein	NA
UHGV-0041754_24	eggNOG-mapper	742738.HMPREF9460_02522	Phage tail sheath C-terminal domain	NA
UHGV-0041754_24	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0041754_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0041754_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0041754_24	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0041754_25	PHROG	phrog_966	NA	unknown function
UHGV-0041754_26	PHROG	phrog_525	NA	unknown function
UHGV-0041754_26	Pfam	PF20765	NA	DUF6838
UHGV-0041754_26	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0041754_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0041754_27	UniRef90	UniRef90_UPI00164CB61C	HK97 gp10 family phage protein	NA
UHGV-0041754_27	eggNOG-mapper	398512.JQKC01000052_gene2665	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0041754_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0041754_27	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0041754_28	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0041754_28	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0041754_29	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0041754_29	UniRef90	UniRef90_UPI00164AB123	NA	NA
UHGV-0041754_29	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0041754_29	Pfam	PF13262	NA	DUF4054
UHGV-0041754_29	Structural annotation	PF13262	NA	NA
UHGV-0041754_30	PHROG	phrog_29824	NA	unknown function
UHGV-0041754_31	PHROG	phrog_264	major head protein	head and packaging
UHGV-0041754_31	UniRef90	UniRef90_UPI00164AAF0B	NA	NA
UHGV-0041754_31	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0041754_31	Pfam	PF09950	NA	DUF2184
UHGV-0041754_31	COG	COG4834	NA	NA
UHGV-0041754_31	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0041754_32	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0041754_32	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0041754_32	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0041754_32	Structural annotation	PF09956	NA	NA
UHGV-0041754_33	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0041754_33	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0041754_33	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0041754_33	eggNOG-mapper	742738.HMPREF9460_02513	NA	NA
UHGV-0041754_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0041754_33	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0041754_33	Structural annotation	PF09956	NA	NA
UHGV-0041754_34	KOfam	K09960	NA	NA
UHGV-0041754_34	PHROG	phrog_16985	NA	unknown function
UHGV-0041754_34	UniRef90	UniRef90_UPI00164BF670	NA	NA
UHGV-0041754_34	eggNOG-mapper	742738.HMPREF9460_02512	NA	NA
UHGV-0041754_34	Pfam	PF09979	NA	DUF2213
UHGV-0041754_34	COG	COG3566	NA	NA
UHGV-0041754_34	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0041754_35	PHROG	phrog_29883	NA	unknown function
UHGV-0041754_35	UniRef90	UniRef90_A0A1Y4L8M4	Rubrerythrin domain-containing protein	NA
UHGV-0041754_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0041754_36	UniRef90	UniRef90_A0A316RHV0	Minor capsid protein	NA
UHGV-0041754_36	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0041754_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0041754_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0041754_36	Structural annotation	PF06152	NA	NA
UHGV-0041754_37	KOfam	K09961	NA	NA
UHGV-0041754_37	PHROG	phrog_146	portal protein	head and packaging
UHGV-0041754_37	UniRef90	UniRef90_G9YWD9	Phage-associated protein, HI1409 family	NA
UHGV-0041754_37	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0041754_37	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0041754_37	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0041754_37	COG	COG3567	NA	NA
UHGV-0041754_37	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0041754_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041754_38	PHROG	phrog_10250	NA	unknown function
UHGV-0041754_38	UniRef90	UniRef90_A0A1Y4L2U5	Terminase_3 domain-containing protein	NA
UHGV-0041754_38	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0041754_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0041754_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041754_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0041754_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0041754_39	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0041754_39	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0041754_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0041754_39	Structural annotation	PF16677	NA	NA
UHGV-0041754_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0041754_40	UniRef90	UniRef90_A0A352BM05	Sigma70_r4 domain-containing protein	NA
UHGV-0041754_40	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0041754_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0041754_40	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0041754_43	Structural annotation	PF19923	NA	NA
UHGV-0041754_48	PHROG	phrog_25385	NA	unknown function
UHGV-0041754_50	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0041754_50	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0041754_50	UniRef90	UniRef90_UPI0019609701	DNA adenine methylase	NA
UHGV-0041754_50	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0041754_50	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0041754_50	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0041754_50	COG	COG0338	DNA-adenine methylase	NA
UHGV-0041754_50	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0041754_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041754_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041754_51	UniRef90	UniRef90_UPI001961C9E0	single-stranded DNA-binding protein	NA
UHGV-0041754_51	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0041754_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041754_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0041754_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041754_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041754_51	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0041754_54	UniRef90	UniRef90_R7B8M3	NA	NA
UHGV-0041754_54	Pfam	PF04448	NA	DUF551
UHGV-0041754_57	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0041754_57	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-0041754_57	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0041754_57	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0041754_57	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0041754_57	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0041754_59	PHROG	phrog_7566	NA	unknown function
UHGV-0041754_59	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0041754_60	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041754_60	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0041754_60	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0041754_61	PHROG	phrog_3777	NA	unknown function
UHGV-0041754_61	UniRef90	UniRef90_UPI0019617347	NA	NA
UHGV-0041754_61	eggNOG-mapper	1131462.DCF50_p1316	NA	NA
UHGV-0041754_61	Pfam	PF12957	NA	DUF3846
UHGV-0041754_61	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0041754_61	Structural annotation	PF12957	NA	NA
UHGV-0041754_63	PHROG	phrog_24518	NA	unknown function
UHGV-0041754_63	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0041754_65	UniRef90	UniRef90_A0A0D8I7B2	HTH_17 domain-containing protein	NA
UHGV-0041754_65	eggNOG-mapper	1029718.SFBM_0098	Helix-turn-helix domain	NA
UHGV-0041754_65	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0041754_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041754_68	UniRef90	UniRef90_R5A8W1	HTH cro/C1-type domain-containing protein	NA
UHGV-0041754_68	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0041754_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041754_68	Structural annotation	PF01381, TIGR02607, COG1396	NA	NA
UHGV-0041754_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041754_69	UniRef90	UniRef90_R5ADP7	HTH cro/C1-type domain-containing protein	NA
UHGV-0041754_69	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0041754_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0041754_69	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0041754_69	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0041754_70	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0041754_70	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0041754_70	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0041754_70	Structural annotation	PF06114	NA	NA
UHGV-0041754_71	KOfam	K14059	int; integrase	NA
UHGV-0041754_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0041754_71	UniRef90	UniRef90_R7BBQ9	Prophage LambdaBa02 site-specific recombinase phage integrase family	NA
UHGV-0041754_71	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0041754_71	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0041754_71	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0041754_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041754_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041754_71	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA