UHGV-0041823

Genome information

Genome length 41,917 bps

CDS count 73

Completeness 98.52% (high-quality)

geNomad score 0.9598

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041823
vOTU ID	vOTU-014101
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_12230
BioSample	SAMEA2042577
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9598
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.02
Jumbo phage	No

Genome content
Genome length	41,917 bps
GC content	33.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.39%
Average CDS length	528.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041823_1	PHROG	phrog_19315	NA	unknown function
UHGV-0041823_1	UniRef90	UniRef90_UPI001F52B13C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0041823_1	eggNOG-mapper	1121929.KB898688_gene10	Rubrerythrin	NA
UHGV-0041823_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0041823_1	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0041823_1	COG	COG1592	Rubrerythrin	NA
UHGV-0041823_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0041823_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0041823_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0041823_2	UniRef90	UniRef90_R6I9P0	HTH cro/C1-type domain-containing protein	NA
UHGV-0041823_2	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0041823_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041823_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0041823_2	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0041823_3	UniRef90	UniRef90_UPI0008D90F56	helix-turn-helix domain-containing protein	NA
UHGV-0041823_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0041823_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0041823_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0041823_4	UniRef90	UniRef90_Q9A012	Putative antirepressor-phage associated	NA
UHGV-0041823_4	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0041823_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0041823_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0041823_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0041823_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0041823_8	Structural annotation	PF13601, TIGR04176, COG1846	NA	NA
UHGV-0041823_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0041823_15	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-0041823_15	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0041823_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0041823_15	Structural annotation	PF05565	NA	NA
UHGV-0041823_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041823_16	UniRef90	UniRef90_A0A412CGN6	ATP-binding protein	NA
UHGV-0041823_16	eggNOG-mapper	1200557.JHWV01000001_gene293	AAA domain	NA
UHGV-0041823_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0041823_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0041823_17	PHROG	phrog_18107	NA	unknown function
UHGV-0041823_17	UniRef90	UniRef90_A0A412CGY7	NA	NA
UHGV-0041823_17	eggNOG-mapper	927704.SELR_18470	NA	NA
UHGV-0041823_17	Pfam	PF05037	NA	DUF669
UHGV-0041823_17	Structural annotation	PF05037	NA	NA
UHGV-0041823_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0041823_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0041823_20	UniRef90	UniRef90_A0A1H8EJI9	DNA replication protein DnaC	NA
UHGV-0041823_20	eggNOG-mapper	546271.Selsp_1349	Primosomal protein DnaI	NA
UHGV-0041823_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0041823_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0041823_20	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0041823_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0041823_24	UniRef90	UniRef90_A0A412CG73	NA	NA
UHGV-0041823_24	eggNOG-mapper	169963.lmo2306	NA	NA
UHGV-0041823_24	Pfam	PF06356	NA	DUF1064
UHGV-0041823_25	PHROG	phrog_98	NA	unknown function
UHGV-0041823_25	UniRef90	UniRef90_UPI001D06D2C9	YopX family protein	NA
UHGV-0041823_25	eggNOG-mapper	1449126.JQKL01000024_gene2352	YopX protein	NA
UHGV-0041823_25	Pfam	PF09643	YopX protein	YopX
UHGV-0041823_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0041823_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0041823_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041823_26	UniRef90	UniRef90_UPI001D0851CD	helix-turn-helix domain-containing protein	NA
UHGV-0041823_26	eggNOG-mapper	591001.Acfer_1946	Helix-turn-helix XRE-family like proteins	NA
UHGV-0041823_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041823_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0041823_26	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0041823_31	UniRef90	UniRef90_UPI001B8B6F02	ribbon-helix-helix protein, CopG family	NA
UHGV-0041823_31	eggNOG-mapper	397287.C807_00114	NA	NA
UHGV-0041823_31	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0041823_32	PHROG	phrog_7940	NA	unknown function
UHGV-0041823_32	UniRef90	UniRef90_UPI001CD32D52	Bro-N domain-containing protein	NA
UHGV-0041823_32	eggNOG-mapper	936573.HMPREF1147_1319	BRO family, N-terminal domain	NA
UHGV-0041823_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0041823_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0041823_32	Structural annotation	PF10543	NA	NA
UHGV-0041823_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0041823_34	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0041823_34	eggNOG-mapper	1392501.JIAC01000001_gene1511	sigma factor activity	NA
UHGV-0041823_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0041823_34	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0041823_35	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0041823_35	PHROG	phrog_10078	NA	unknown function
UHGV-0041823_35	UniRef90	UniRef90_H3K5H6	Antitoxin	NA
UHGV-0041823_35	eggNOG-mapper	1511.CLOST_0725	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0041823_35	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0041823_35	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0041823_35	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0041823_35	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0041823_36	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0041823_36	UniRef90	UniRef90_UPI00195AD3A9	phage terminase small subunit	NA
UHGV-0041823_36	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0041823_36	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0041823_36	COG	COG5484	NA	NA
UHGV-0041823_36	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0041823_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0041823_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0041823_37	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0041823_37	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0041823_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0041823_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0041823_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0041823_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0041823_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0041823_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0041823_38	UniRef90	UniRef90_UPI001CD66E01	phage portal protein	NA
UHGV-0041823_38	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0041823_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0041823_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0041823_39	PHROG	phrog_29127	NA	unknown function
UHGV-0041823_39	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0041823_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0041823_41	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0041823_41	eggNOG-mapper	1111454.HMPREF1250_0184	Phage minor structural protein GP20	NA
UHGV-0041823_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0041823_41	Structural annotation	PF06810	NA	NA
UHGV-0041823_42	PHROG	phrog_247	major head protein	head and packaging
UHGV-0041823_42	UniRef90	UniRef90_UPI001D00946D	major capsid protein	NA
UHGV-0041823_42	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0041823_42	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0041823_42	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0041823_43	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0041823_43	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0041823_43	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0041823_43	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0041823_43	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0041823_43	COG	COG2369	NA	NA
UHGV-0041823_43	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0041823_46	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0041823_46	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0041823_47	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0041823_47	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0041823_47	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0041823_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0041823_48	UniRef90	UniRef90_UPI001D002B4E	HK97 gp10 family phage protein	NA
UHGV-0041823_48	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0041823_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0041823_48	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0041823_49	PHROG	phrog_525	NA	unknown function
UHGV-0041823_49	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0041823_49	Pfam	PF20765	NA	DUF6838
UHGV-0041823_49	Structural annotation	PF20765	NA	NA
UHGV-0041823_50	PHROG	phrog_1480	tail sheath	tail
UHGV-0041823_50	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0041823_50	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0041823_50	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0041823_50	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0041823_50	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0041823_51	PHROG	phrog_365	tail protein	tail
UHGV-0041823_51	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0041823_51	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0041823_51	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0041823_51	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0041823_52	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0041823_52	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0041823_52	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0041823_52	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0041823_52	Structural annotation	PF08890	NA	NA
UHGV-0041823_54	PHROG	phrog_16692	NA	unknown function
UHGV-0041823_54	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0041823_54	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0041823_54	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0041823_54	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0041823_54	COG	COG5283	Phage-related tail protein	NA
UHGV-0041823_54	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0041823_55	PHROG	phrog_380	endolysin	lysis
UHGV-0041823_55	UniRef90	UniRef90_UPI001F405395	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0041823_55	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0041823_55	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0041823_55	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0041823_56	PHROG	phrog_400	tail protein	tail
UHGV-0041823_56	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0041823_56	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0041823_56	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0041823_56	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0041823_57	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0041823_57	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0041823_57	UniRef90	UniRef90_UPI001959F5E2	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0041823_57	eggNOG-mapper	645991.Sgly_2496	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0041823_57	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0041823_57	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0041823_57	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0041823_58	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0041823_58	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0041823_58	UniRef90	UniRef90_A0A3D0M7R5	Toxin HicA	NA
UHGV-0041823_58	eggNOG-mapper	591001.Acfer_1288	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0041823_58	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0041823_58	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0041823_58	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0041823_59	PHROG	phrog_579	NA	unknown function
UHGV-0041823_59	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0041823_59	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0041823_59	Pfam	PF10844	NA	DUF2577
UHGV-0041823_59	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0041823_60	PHROG	phrog_120	baseplate protein	tail
UHGV-0041823_60	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0041823_60	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0041823_60	Pfam	PF10934	NA	DUF2634
UHGV-0041823_60	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0041823_61	PHROG	phrog_6	baseplate protein	tail
UHGV-0041823_61	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0041823_61	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0041823_61	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0041823_61	COG	COG3299	NA	NA
UHGV-0041823_61	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0041823_62	PHROG	phrog_521	tail protein	tail
UHGV-0041823_62	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0041823_62	eggNOG-mapper	568816.Acin_1958	NA	NA
UHGV-0041823_62	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0041823_62	COG	COG3778	NA	NA
UHGV-0041823_62	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0041823_63	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-0041823_63	Structural annotation	PF12571	NA	NA
UHGV-0041823_64	PHROG	phrog_18608	NA	unknown function
UHGV-0041823_64	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-0041823_64	Structural annotation	PF18463, NF012201	NA	NA
UHGV-0041823_68	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-0041823_70	KOfam	K14059	int; integrase	NA
UHGV-0041823_70	PHROG	phrog_1	integrase	integration and excision
UHGV-0041823_70	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-0041823_70	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0041823_70	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041823_70	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0041823_70	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0041823_71	PHROG	phrog_4105	NA	unknown function
UHGV-0041823_71	eggNOG-mapper	768486.EHR_00560	NA	NA
UHGV-0041823_72	eggNOG-mapper	1273103.NM10_01736	NA	NA
UHGV-0041823_73	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0041823_73	PHROG	phrog_435	endolysin	lysis
UHGV-0041823_73	UniRef90	UniRef90_H3K6Q0	MurNAc-LAA domain-containing protein	NA
UHGV-0041823_73	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041823_73	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0041823_73	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0041823_73	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA