UHGV-0041855

Genome information

Genome length 34,141 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9675

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041855
vOTU ID	vOTU-014102
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_10654
BioSample	SAMEA2042624
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9675
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.46
Jumbo phage	No

Genome content
Genome length	34,141 bps
GC content	47.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.74%
Average CDS length	636.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041855_1	UniRef90	UniRef90_UPI001E49F03F	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA
UHGV-0041855_1	eggNOG-mapper	436114.SYO3AOP1_0491	Eco57I restriction-modification methylase	NA
UHGV-0041855_1	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0041855_2	UniRef90	UniRef90_A0A6G0G2K8	DNA modification methylase	NA
UHGV-0041855_2	eggNOG-mapper	553171.HMPREF0648_0958	DNA restriction-modification system	NA
UHGV-0041855_2	PADLOC	PglX_00002	PglX	BREX
UHGV-0041855_2	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0041855_3	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0041855_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0041855_3	UniRef90	UniRef90_A0A6G0G2A0	Master DNA invertase Mpi family serine-type recombinase	NA
UHGV-0041855_3	eggNOG-mapper	1125700.HMPREF9195_00972	COGs COG1961 Site-specific recombinase DNA invertase Pin homologs	NA
UHGV-0041855_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0041855_3	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0041855_3	NCBIFam	NF009949.0	master DNA invertase Mpi family serine-type recombinase	NA
UHGV-0041855_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0041855_3	Structural annotation	PF00239, PF13384, NF009949, COG1961	NA	NA
UHGV-0041855_4	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0041855_5	PHROG	phrog_874	NA	unknown function
UHGV-0041855_5	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0041855_5	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0041855_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0041855_10	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0041855_10	UniRef90	UniRef90_B0MWV7	Cytosine-specific methyltransferase	NA
UHGV-0041855_10	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0041855_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0041855_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0041855_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0041855_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0041855_10	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0041855_11	Structural annotation	PF13835, NF000243	NA	NA
UHGV-0041855_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0041855_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0041855_12	UniRef90	UniRef90_A0A845PBA0	ATP-binding protein	NA
UHGV-0041855_12	eggNOG-mapper	1122973.KB904237_gene181	DNA-dependent DNA replication	NA
UHGV-0041855_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0041855_12	Structural annotation	PF00308, MF_03025, NF005992, COG1484	NA	NA
UHGV-0041855_13	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0041855_13	eggNOG-mapper	1123058.KB894259_gene376	NA	NA
UHGV-0041855_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0041855_13	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0041855_14	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0041855_14	eggNOG-mapper	1046625.AFQY01000003_gene2217	NA	NA
UHGV-0041855_14	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0041855_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0041855_15	eggNOG-mapper	1127696.HMPREF9134_00465	NA	NA
UHGV-0041855_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0041855_16	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041855_16	UniRef90	UniRef90_A0A3E4WFL2	NA	NA
UHGV-0041855_16	eggNOG-mapper	762968.HMPREF9441_02241	NA	NA
UHGV-0041855_16	Pfam	PF11325	NA	DUF3127
UHGV-0041855_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041855_16	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0041855_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0041855_17	UniRef90	UniRef90_A0A6J5QVI4	Siphovirus Gp157	NA
UHGV-0041855_17	eggNOG-mapper	85154.O34039_BPO12	Siphovirus Gp157	NA
UHGV-0041855_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0041855_17	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0041855_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041855_18	UniRef90	UniRef90_UPI0016270003	ERF family protein	NA
UHGV-0041855_18	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0041855_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0041855_18	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0041855_19	PHROG	phrog_32789	NA	unknown function
UHGV-0041855_19	UniRef90	UniRef90_UPI0018736416	acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	NA
UHGV-0041855_19	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0041855_19	Structural annotation	COG0663	NA	NA
UHGV-0041855_21	PHROG	phrog_21498	NA	unknown function
UHGV-0041855_21	UniRef90	UniRef90_A0A3R6J122	Chromosome partitioning protein ParB	NA
UHGV-0041855_21	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-0041855_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0041855_21	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0041855_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0041855_29	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-0041855_29	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-0041855_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0041855_29	Structural annotation	PF07141	NA	NA
UHGV-0041855_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0041855_31	UniRef90	UniRef90_K1ULJ1	Phage terminase large subunit	NA
UHGV-0041855_31	eggNOG-mapper	521097.Coch_0896	Terminase-like family	NA
UHGV-0041855_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0041855_31	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0041855_34	eggNOG-mapper	1122931.AUAE01000005_gene3263	NA	NA
UHGV-0041855_36	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0041855_37	PHROG	phrog_14295	NA	unknown function
UHGV-0041855_37	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-0041855_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0041855_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0041855_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0041855_38	UniRef90	UniRef90_K1U006	Peptidase S14, ClpP	NA
UHGV-0041855_38	eggNOG-mapper	1347393.HG726026_gene2525	Clp protease	NA
UHGV-0041855_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0041855_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0041855_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0041855_39	PHROG	phrog_38780	NA	unknown function
UHGV-0041855_39	eggNOG-mapper	1121898.Q766_16045	NA	NA
UHGV-0041855_39	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0041855_40	PHROG	phrog_21217	NA	unknown function
UHGV-0041855_40	eggNOG-mapper	1347393.HG726026_gene2527	NA	NA
UHGV-0041855_42	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0041855_42	UniRef90	UniRef90_A0A1V5IXK9	Phage portal protein	NA
UHGV-0041855_42	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0041855_42	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0041855_43	eggNOG-mapper	357276.EL88_08350	NA	NA
UHGV-0041855_43	Structural annotation	PF20459	NA	NA
UHGV-0041855_45	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0041855_45	PHROG	phrog_894	endolysin	lysis
UHGV-0041855_45	UniRef90	UniRef90_UPI001CF8EF38	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0041855_45	eggNOG-mapper	1501391.LG35_04555	Peptidase M15	NA
UHGV-0041855_45	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0041855_45	COG	COG3108	NA	NA
UHGV-0041855_45	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0041855_46	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-0041855_47	PHROG	phrog_26448	NA	unknown function
UHGV-0041855_47	eggNOG-mapper	449673.BACSTE_00850	NA	NA
UHGV-0041855_47	Pfam	PF20647	NA	DUF6808
UHGV-0041855_47	Structural annotation	PF20647	NA	NA