UHGV-0041857

Genome information

Genome length 30,350 bps

CDS count 51

Completeness 97.22% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041857
vOTU ID	vOTU-078831
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_10639
BioSample	SAMEA2042644
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.14
Jumbo phage	No

Genome content
Genome length	30,350 bps
GC content	38.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.26%
Average CDS length	552.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041857_1	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0041857_1	PHROG	phrog_1499	NA	unknown function
UHGV-0041857_1	UniRef90	UniRef90_A0A374HKI1	AAA_23 domain-containing protein	NA
UHGV-0041857_1	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0041857_1	Pfam	PF13476	AAA domain	AAA_23
UHGV-0041857_1	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0041857_1	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0041857_2	PHROG	phrog_21613	NA	unknown function
UHGV-0041857_2	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0041857_3	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041857_3	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0041857_3	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0041857_3	Pfam	PF12684	NA	DUF3799
UHGV-0041857_3	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0041857_3	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0041857_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041857_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041857_4	UniRef90	UniRef90_A0A3D0X741	Single-stranded DNA-binding protein	NA
UHGV-0041857_4	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0041857_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041857_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0041857_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041857_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041857_4	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0041857_5	PHROG	phrog_8600	NA	unknown function
UHGV-0041857_5	UniRef90	UniRef90_F9MTR3	YozE_SAM_like domain-containing protein	NA
UHGV-0041857_5	eggNOG-mapper	879308.HMPREF9130_0832	YozE SAM-like fold	NA
UHGV-0041857_5	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0041857_6	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0041857_6	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0041857_6	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0041857_6	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0041857_6	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0041857_8	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0041857_8	PHROG	phrog_11992	NA	unknown function
UHGV-0041857_8	UniRef90	UniRef90_A0A358PLG9	DNA primase	NA
UHGV-0041857_8	eggNOG-mapper	1105031.HMPREF1141_1761	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0041857_8	PADLOC	drt-cluster192	DRT	DRT
UHGV-0041857_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0041857_8	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0041857_8	Structural annotation	PF01807	NA	NA
UHGV-0041857_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0041857_9	UniRef90	UniRef90_UPI000C07D7A2	NA	NA
UHGV-0041857_9	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0041857_9	Pfam	PF06048	NA	DUF927
UHGV-0041857_9	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0041857_9	COG	COG5519	NA	NA
UHGV-0041857_9	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0041857_11	UniRef90	UniRef90_UPI001CD21EDD	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0041857_11	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0041857_11	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0041857_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0041857_12	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041857_12	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0041857_12	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0041857_12	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0041857_12	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0041857_13	PHROG	phrog_8684	NA	unknown function
UHGV-0041857_13	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0041857_13	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-0041857_13	Pfam	PF09643	YopX protein	YopX
UHGV-0041857_13	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0041857_13	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0041857_14	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0041857_14	Structural annotation	PF15597	NA	NA
UHGV-0041857_16	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041857_16	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-0041857_16	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0041857_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0041857_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0041857_16	Structural annotation	PF13395, TIGR02646, COG1403	NA	NA
UHGV-0041857_17	Structural annotation	PF18337, MF_01194, NF000331, COG1862	NA	NA
UHGV-0041857_18	PHROG	phrog_25754	NA	unknown function
UHGV-0041857_18	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0041857_18	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-0041857_19	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0041857_19	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0041857_19	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0041857_24	eggNOG-mapper	1035196.HMPREF9998_01748	methyltransferase	NA
UHGV-0041857_24	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0041857_25	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0041857_25	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0041857_25	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-0041857_25	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0041857_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041857_28	UniRef90	UniRef90_A0A412LC59	XRE family transcriptional regulator	NA
UHGV-0041857_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041857_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0041857_28	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0041857_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041857_29	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0041857_29	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0041857_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0041857_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0041857_30	PHROG	phrog_1066	NA	unknown function
UHGV-0041857_30	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0041857_30	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0041857_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0041857_31	UniRef90	UniRef90_A0A150ATJ6	Terminase	NA
UHGV-0041857_31	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0041857_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0041857_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0041857_31	Structural annotation	PF03354, NF003298, COG4626	NA	NA
UHGV-0041857_32	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0041857_32	UniRef90	UniRef90_UPI000A8BA2A3	terminase large subunit	NA
UHGV-0041857_32	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0041857_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0041857_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0041857_32	Structural annotation	PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0041857_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0041857_33	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0041857_33	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0041857_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0041857_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0041857_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0041857_34	PHROG	phrog_21498	NA	unknown function
UHGV-0041857_34	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0041857_34	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0041857_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0041857_34	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0041857_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0041857_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0041857_35	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0041857_35	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0041857_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0041857_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0041857_35	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0041857_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0041857_36	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0041857_36	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0041857_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0041857_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0041857_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0041857_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0041857_37	PHROG	phrog_5223	neck protein	connector
UHGV-0041857_37	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0041857_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0041857_37	Structural annotation	TIGR01560	NA	NA
UHGV-0041857_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0041857_38	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0041857_38	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0041857_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0041857_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0041857_39	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0041857_39	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0041857_39	Structural annotation	TIGR01725	NA	NA
UHGV-0041857_40	Structural annotation	PF12691	NA	NA
UHGV-0041857_41	PHROG	phrog_885	major tail protein	tail
UHGV-0041857_41	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0041857_41	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0041857_41	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0041857_42	eggNOG-mapper	272562.CA_C0058	NA	NA
UHGV-0041857_44	PHROG	phrog_23464	NA	unknown function
UHGV-0041857_44	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0041857_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0041857_44	Structural annotation	COG3941	NA	NA
UHGV-0041857_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0041857_45	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0041857_45	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0041857_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0041857_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0041857_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0041857_46	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0041857_46	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0041857_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0041857_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0041857_46	COG	COG4926	Phage-related protein	NA
UHGV-0041857_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0041857_47	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0041857_47	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0041857_47	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0041857_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0041857_49	PHROG	phrog_291	endolysin	lysis
UHGV-0041857_49	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0041857_49	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0041857_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0041857_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0041857_49	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0041857_50	UniRef90	UniRef90_A0A315XUP3	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0041857_50	eggNOG-mapper	1410617.JHXH01000019_gene1115	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0041857_50	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0041857_50	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0041857_51	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-0041857_51	PHROG	phrog_1569	NA	unknown function
UHGV-0041857_51	UniRef90	UniRef90_A0A356AKQ3	Methionine adenosyltransferase (Fragment)	NA
UHGV-0041857_51	eggNOG-mapper	1120746.CCNL01000011_gene1568	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	NA
UHGV-0041857_51	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0041857_51	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-0041857_51	COG	COG0192	S-adenosylmethionine synthetase	NA