UHGV-0041911

Genome information

Genome length 43,012 bps

CDS count 73

Completeness 68.88% (medium-quality)

geNomad score 0.9421

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041911
vOTU ID	vOTU-034317
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_19811
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	30
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9421
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.84
Jumbo phage	No

Genome content
Genome length	43,012 bps
GC content	38.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.47%
Average CDS length	535.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041911_1	UniRef90	UniRef90_UPI0008EA56B2	NA	NA
UHGV-0041911_1	eggNOG-mapper	1262914.BN533_00309	NA	NA
UHGV-0041911_2	eggNOG-mapper	1500893.JQNB01000001_gene2908	NA	NA
UHGV-0041911_3	PHROG	phrog_87	metallo-protease	other
UHGV-0041911_3	UniRef90	UniRef90_A0A7X3BWL3	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0041911_3	eggNOG-mapper	864563.HMPREF9166_1289	IrrE N-terminal-like domain	NA
UHGV-0041911_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0041911_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0041911_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0041911_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0041911_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041911_4	UniRef90	UniRef90_UPI001EE00BF6	helix-turn-helix transcriptional regulator	NA
UHGV-0041911_4	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0041911_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041911_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0041911_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0041911_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0041911_5	UniRef90	UniRef90_UPI000CDB90CB	helix-turn-helix domain-containing protein	NA
UHGV-0041911_5	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0041911_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041911_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0041911_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0041911_6	Structural annotation	PF06531, TIGR04550, COG3422	NA	NA
UHGV-0041911_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0041911_8	eggNOG-mapper	632518.Calow_0810	Helix-turn-helix XRE-family like proteins	NA
UHGV-0041911_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0041911_8	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0041911_10	UniRef90	UniRef90_A0A0J6WY89	LysM domain-containing protein	NA
UHGV-0041911_10	eggNOG-mapper	1280679.ATVX01000006_gene1529	LysM domain	NA
UHGV-0041911_10	Pfam	PF01476	LysM domain	LysM
UHGV-0041911_10	COG	COG1388	LysM repeat	NA
UHGV-0041911_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041911_12	UniRef90	UniRef90_UPI000415F195	YqaJ viral recombinase family protein	NA
UHGV-0041911_12	eggNOG-mapper	546271.Selsp_1353	YqaJ viral recombinase family protein	NA
UHGV-0041911_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0041911_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0041911_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0041911_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0041911_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0041911_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041911_13	UniRef90	UniRef90_A0A316S9I2	Recombinase RecT	NA
UHGV-0041911_13	eggNOG-mapper	272626.lin0085	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0041911_13	Pfam	PF03837	RecT family	RecT
UHGV-0041911_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0041911_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0041911_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0041911_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0041911_14	PHROG	phrog_29443	NA	unknown function
UHGV-0041911_14	UniRef90	UniRef90_UPI00044D3944	DNA cytosine methyltransferase	NA
UHGV-0041911_14	eggNOG-mapper	324057.Pjdr2_1600	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0041911_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0041911_15	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0041911_15	UniRef90	UniRef90_UPI001EE0FE88	radical SAM protein	NA
UHGV-0041911_15	eggNOG-mapper	1235800.C819_00846	NA	NA
UHGV-0041911_15	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0041911_15	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0041911_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0041911_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0041911_16	UniRef90	UniRef90_UPI001D2D721E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0041911_16	eggNOG-mapper	469617.FUAG_00816	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0041911_16	PADLOC	SspD_00001	SspD	SSP
UHGV-0041911_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0041911_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0041911_16	Structural annotation	PF01507, NF006327, COG0603	NA	NA
UHGV-0041911_17	eggNOG-mapper	1235790.C805_00061	NA	NA
UHGV-0041911_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0041911_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0041911_20	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-0041911_20	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0041911_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0041911_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0041911_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0041911_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0041911_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0041911_23	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041911_23	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0041911_23	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0041911_23	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0041911_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0041911_24	UniRef90	UniRef90_UPI001CD7177D	NA	NA
UHGV-0041911_24	eggNOG-mapper	556263.FSEG_01048	NA	NA
UHGV-0041911_24	Pfam	PF14359	NA	DUF4406
UHGV-0041911_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0041911_26	Structural annotation	PF18892	NA	NA
UHGV-0041911_28	KOfam	K06940	NA	NA
UHGV-0041911_28	PHROG	phrog_32498	NA	unknown function
UHGV-0041911_28	UniRef90	UniRef90_UPI001D01BADA	YkgJ family cysteine cluster protein	NA
UHGV-0041911_28	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0041911_28	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0041911_29	PHROG	phrog_5984	NA	unknown function
UHGV-0041911_29	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-0041911_29	Structural annotation	PF19561	NA	NA
UHGV-0041911_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0041911_30	UniRef90	UniRef90_A0A7X2XHL8	NA	NA
UHGV-0041911_30	eggNOG-mapper	1009370.ALO_12696	NA	NA
UHGV-0041911_30	Pfam	PF06356	NA	DUF1064
UHGV-0041911_30	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0041911_32	PHROG	phrog_8514	NA	unknown function
UHGV-0041911_38	PHROG	phrog_8684	NA	unknown function
UHGV-0041911_38	UniRef90	UniRef90_A8ASP1	Gp52	NA
UHGV-0041911_38	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-0041911_38	Pfam	PF09643	YopX protein	YopX
UHGV-0041911_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0041911_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0041911_39	PHROG	phrog_22543	NA	unknown function
UHGV-0041911_45	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0041911_45	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0041911_45	UniRef90	UniRef90_A0A7X7UA39	Methyltransferase	NA
UHGV-0041911_45	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0041911_45	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0041911_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0041911_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0041911_45	COG	COG0863	DNA modification methylase	NA
UHGV-0041911_45	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0041911_46	eggNOG-mapper	290402.Cbei_1634	transposase activity	NA
UHGV-0041911_46	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0041911_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0041911_47	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0041911_47	UniRef90	UniRef90_A0A1H7A8B2	Phage terminase small subunit	NA
UHGV-0041911_47	eggNOG-mapper	748727.CLJU_c31400	Terminase small subunit	NA
UHGV-0041911_47	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0041911_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0041911_47	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0041911_48	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0041911_48	UniRef90	UniRef90_UPI001D0669B9	phage terminase large subunit	NA
UHGV-0041911_48	eggNOG-mapper	537013.CLOSTMETH_01727	Terminase RNaseH-like domain	NA
UHGV-0041911_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0041911_48	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0041911_48	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0041911_48	COG	COG5362	Phage terminase large subunit	NA
UHGV-0041911_48	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0041911_49	KOfam	K09961	NA	NA
UHGV-0041911_49	PHROG	phrog_146	portal protein	head and packaging
UHGV-0041911_49	UniRef90	UniRef90_UPI0012DECB78	NA	NA
UHGV-0041911_49	eggNOG-mapper	1120985.AUMI01000019_gene2237	NA	NA
UHGV-0041911_49	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0041911_49	COG	COG3567	NA	NA
UHGV-0041911_49	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0041911_50	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0041911_50	UniRef90	UniRef90_H3K681	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0041911_50	eggNOG-mapper	1120985.AUMI01000019_gene2236	Phage Mu protein F like protein	NA
UHGV-0041911_50	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0041911_50	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0041911_50	COG	COG2369	NA	NA
UHGV-0041911_50	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0041911_52	KOfam	K09960	NA	NA
UHGV-0041911_52	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-0041911_52	UniRef90	UniRef90_A0A642A9F5	NA	NA
UHGV-0041911_52	eggNOG-mapper	925984.E5AGA6_9CAUD	NA	NA
UHGV-0041911_52	Pfam	PF09979	NA	DUF2213
UHGV-0041911_52	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0041911_53	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0041911_53	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0041911_54	PHROG	phrog_264	major head protein	head and packaging
UHGV-0041911_54	UniRef90	UniRef90_UPI00040BF0A9	NA	NA
UHGV-0041911_54	eggNOG-mapper	1120985.AUMI01000019_gene2233	NA	NA
UHGV-0041911_54	Pfam	PF09950	NA	DUF2184
UHGV-0041911_54	COG	COG4834	NA	NA
UHGV-0041911_54	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0041911_55	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0041911_55	Structural annotation	PF09124	NA	NA
UHGV-0041911_56	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0041911_56	UniRef90	UniRef90_A0A6I2QXG2	NA	NA
UHGV-0041911_56	eggNOG-mapper	1120985.AUMI01000019_gene2231	NA	NA
UHGV-0041911_56	Pfam	PF13262	NA	DUF4054
UHGV-0041911_56	Structural annotation	PF13262	NA	NA
UHGV-0041911_57	PHROG	phrog_222	tail protein	tail
UHGV-0041911_57	eggNOG-mapper	243265.plu2894	NA	NA
UHGV-0041911_58	PHROG	phrog_939	head protein	head and packaging
UHGV-0041911_58	eggNOG-mapper	1120985.AUMI01000019_gene2229	NA	NA
UHGV-0041911_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0041911_59	PHROG	phrog_7975	tail terminator	connector
UHGV-0041911_60	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0041911_60	UniRef90	UniRef90_A0A346B172	NA	NA
UHGV-0041911_60	eggNOG-mapper	1120985.AUMI01000001_gene2168	NA	NA
UHGV-0041911_60	Pfam	PF11863	NA	DUF3383
UHGV-0041911_60	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0041911_61	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0041911_61	UniRef90	UniRef90_A0A2A7AVG4	NA	NA
UHGV-0041911_61	eggNOG-mapper	1118235.CAJH01000039_gene2476	NA	NA
UHGV-0041911_61	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0041911_62	PHROG	phrog_1613	tail assembly chaperone	tail
UHGV-0041911_62	eggNOG-mapper	1120985.AUMI01000001_gene2166	NA	NA
UHGV-0041911_62	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0041911_64	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0041911_64	UniRef90	UniRef90_I9LG88	Phage tape measure protein	NA
UHGV-0041911_64	eggNOG-mapper	1122947.FR7_2621	tape measure	NA
UHGV-0041911_64	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0041911_64	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0041911_64	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0041911_64	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0041911_65	PHROG	phrog_817	tail fiber protein	tail
UHGV-0041911_65	eggNOG-mapper	1120985.AUMI01000001_gene2163	NA	NA
UHGV-0041911_65	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0041911_65	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0041911_66	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0041911_66	eggNOG-mapper	1118235.CAJH01000039_gene2481	NA	NA
UHGV-0041911_66	Structural annotation	PF06531	NA	NA
UHGV-0041911_67	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0041911_67	UniRef90	UniRef90_A0A085HGF6	NA	NA
UHGV-0041911_67	eggNOG-mapper	1120985.AUMI01000001_gene2161	NA	NA
UHGV-0041911_68	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0041911_68	eggNOG-mapper	1392838.AWNM01000071_gene635	NA	NA
UHGV-0041911_69	PHROG	phrog_11	baseplate protein	tail
UHGV-0041911_69	UniRef90	UniRef90_A0A346B179	Gp138_N domain-containing protein	NA
UHGV-0041911_69	eggNOG-mapper	1028806.GGE_1967	Baseplate assembly protein	NA
UHGV-0041911_69	Pfam	PF18352	NA	Gp138_N
UHGV-0041911_69	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0041911_69	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0041911_69	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0041911_70	PHROG	phrog_120	baseplate protein	tail
UHGV-0041911_70	eggNOG-mapper	1120985.AUMI01000001_gene2159	NA	NA
UHGV-0041911_70	Structural annotation	TIGR03357, COG3628	NA	NA
UHGV-0041911_71	PHROG	phrog_6	baseplate protein	tail
UHGV-0041911_71	UniRef90	UniRef90_A0A346B181	Baseplate_J domain-containing protein	NA
UHGV-0041911_71	eggNOG-mapper	391165.GbCGDNIH1_1561	homolog of phage Mu protein gp47	NA
UHGV-0041911_71	COG	COG3299	NA	NA
UHGV-0041911_71	Structural annotation	PF03434, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0041911_72	PHROG	phrog_587	structural protein	head and packaging
UHGV-0041911_72	UniRef90	UniRef90_UPI000735C8AB	NA	NA
UHGV-0041911_72	eggNOG-mapper	1120985.AUMI01000001_gene2157	NA	NA
UHGV-0041911_72	Pfam	PF11041	NA	DUF2612
UHGV-0041911_72	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0041911_73	PHROG	phrog_9625	NA	unknown function
UHGV-0041911_73	UniRef90	UniRef90_UPI000D5E2434	head decoration protein	NA
UHGV-0041911_73	eggNOG-mapper	1980924.B2ZY62_9CAUD	NA	NA