UHGV-0041957

Genome information

Genome length 13,362 bps

CDS count 19

Completeness 97.65% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041957
vOTU ID	vOTU-065741
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_2215
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.34
Jumbo phage	No

Genome content
Genome length	13,362 bps
GC content	42.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	95.34%
Average CDS length	675.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041957_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0041957_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0041957_4	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0041957_4	eggNOG-mapper	338473.A6XAD2_9CAUD	nucleotide binding	NA
UHGV-0041957_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0041957_4	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0041957_5	Structural annotation	PF17427	NA	NA
UHGV-0041957_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0041957_6	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0041957_6	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0041957_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0041957_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0041957_8	KOfam	K19224	lytE, cwlF; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]	NA
UHGV-0041957_8	PHROG	phrog_329	minor tail protein	tail
UHGV-0041957_8	eggNOG-mapper	1122927.KB895413_gene1634	hydrolase	NA
UHGV-0041957_8	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0041957_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0041957_8	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0041957_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0041957_10	UniRef90	UniRef90_A0A843HLC3	BIG2 domain-containing protein	NA
UHGV-0041957_10	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0041957_11	PHROG	phrog_11037	NA	unknown function
UHGV-0041957_11	UniRef90	UniRef90_UPI00068A2163	phage tail tip lysozyme	NA
UHGV-0041957_11	eggNOG-mapper	509191.AEDB02000088_gene2621	Lysin motif	NA
UHGV-0041957_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0041957_11	COG	COG1388	LysM repeat	NA
UHGV-0041957_11	Structural annotation	PF18013	NA	NA
UHGV-0041957_12	Structural annotation	PF20934	NA	NA
UHGV-0041957_13	PHROG	phrog_2038	upper collar connector	connector
UHGV-0041957_13	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0041957_13	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0041957_13	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0041957_13	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0041957_15	Structural annotation	PF15868, NF012201	NA	NA