UHGV-0041979

Genome information

Genome length 40,683 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0041979
vOTU ID	vOTU-075884
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3053
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	38
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.15
Jumbo phage	No

Genome content
Genome length	40,683 bps
GC content	52.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.39%
Average CDS length	728.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0041979_1	KOfam	K14059	int; integrase	NA
UHGV-0041979_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0041979_1	UniRef90	UniRef90_A0A482MGB2	Integrase	NA
UHGV-0041979_1	eggNOG-mapper	1327941.T1SAN6_9CAUD	Pfam:Arm-DNA-bind_3	NA
UHGV-0041979_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0041979_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0041979_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0041979_1	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0041979_2	PHROG	phrog_4701	NA	unknown function
UHGV-0041979_3	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0041979_3	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0041979_3	UniRef90	UniRef90_S4VBD5	Adenine methylase	NA
UHGV-0041979_3	eggNOG-mapper	1327941.T1SA50_9CAUD	nucleobase-containing compound metabolic process	NA
UHGV-0041979_3	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0041979_3	Pfam	PF05063	MT-A70	MT-A70
UHGV-0041979_3	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0041979_4	PHROG	phrog_292	NA	unknown function
UHGV-0041979_4	UniRef90	UniRef90_A0A859WQZ4	NA	NA
UHGV-0041979_4	eggNOG-mapper	379329.Q08J55_9CAUD	NA	NA
UHGV-0041979_4	Pfam	PF07131	NA	DUF1382
UHGV-0041979_4	Structural annotation	PF07131	NA	NA
UHGV-0041979_5	PHROG	phrog_1998	NA	unknown function
UHGV-0041979_5	UniRef90	UniRef90_A0A0J2G0U7	NA	NA
UHGV-0041979_5	eggNOG-mapper	1327941.T1SBI4_9CAUD	NA	NA
UHGV-0041979_5	Pfam	PF07026	NA	DUF1317
UHGV-0041979_6	PHROG	phrog_868	transcriptional activator	transcription regulation
UHGV-0041979_6	UniRef90	UniRef90_A0A2J5NS26	PerC transcriptional activator family protein	NA
UHGV-0041979_6	eggNOG-mapper	215158.Q858E4_BPE15	PerC transcriptional activator	NA
UHGV-0041979_6	Pfam	PF06069	PerC transcriptional activator	PerC
UHGV-0041979_7	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0041979_7	UniRef90	UniRef90_A0A2J5N8Z3	AlpA family phage regulatory protein	NA
UHGV-0041979_7	eggNOG-mapper	215158.Q858E2_BPE15	NA	NA
UHGV-0041979_7	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0041979_7	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0041979_8	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0041979_8	UniRef90	UniRef90_UPI000CF351B9	recombinase RecT	NA
UHGV-0041979_8	eggNOG-mapper	1327941.T1S9Y8_9CAUD	DNA metabolic process	NA
UHGV-0041979_8	Pfam	PF03837	RecT family	RecT
UHGV-0041979_8	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0041979_9	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0041979_9	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0041979_9	UniRef90	UniRef90_UPI001CBC1A35	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0041979_9	eggNOG-mapper	1124654.G9L6A3_9CAUD	NA	NA
UHGV-0041979_9	Pfam	PF12684	NA	DUF3799
UHGV-0041979_9	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0041979_10	PHROG	phrog_856	NA	unknown function
UHGV-0041979_10	eggNOG-mapper	343516.Q286X9_9CAUD	NA	NA
UHGV-0041979_10	Structural annotation	PF06064	NA	NA
UHGV-0041979_11	PHROG	phrog_898	NA	unknown function
UHGV-0041979_11	UniRef90	UniRef90_A0A345IPT5	NA	NA
UHGV-0041979_11	eggNOG-mapper	343516.Q286X8_9CAUD	NA	NA
UHGV-0041979_12	PHROG	phrog_13326	NA	unknown function
UHGV-0041979_12	UniRef90	UniRef90_A0A859RQX2	Helix-turn-helix transcriptional regulator	NA
UHGV-0041979_12	eggNOG-mapper	215158.Q858D7_BPE15	sequence-specific DNA binding	NA
UHGV-0041979_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0041979_12	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0041979_13	eggNOG-mapper	215158.Q858D6_BPE15	NA	NA
UHGV-0041979_13	Structural annotation	PF01381	NA	NA
UHGV-0041979_14	PHROG	phrog_1081	NA	unknown function
UHGV-0041979_14	eggNOG-mapper	520999.PROVALCAL_01902	NA	NA
UHGV-0041979_15	PHROG	phrog_874	NA	unknown function
UHGV-0041979_15	UniRef90	UniRef90_UPI0011DE6B15	morphogenetic protein	NA
UHGV-0041979_15	eggNOG-mapper	1229485.AMYV01000187_gene3444	NA	NA
UHGV-0041979_15	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0041979_16	PHROG	phrog_2509	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0041979_16	UniRef90	UniRef90_A0A2W5FTQ3	DNA replication domain protein	NA
UHGV-0041979_16	eggNOG-mapper	517433.PanABDRAFT_3691	sty2063 SWALL Q8Z5Z8 (EMBL AL627272) (262 aa) fasta scores E() 1.5e-07, 24.43 id in 266 aa, and to Escherichia coli O157 H7	NA
UHGV-0041979_16	Structural annotation	PF17948, PF09681, MF_01061, NF002770, TIGR01714	NA	NA
UHGV-0041979_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0041979_17	UniRef90	UniRef90_A0A859R947	NA	NA
UHGV-0041979_17	eggNOG-mapper	517433.PanABDRAFT_3689	NA	NA
UHGV-0041979_17	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0041979_18	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0041979_18	UniRef90	UniRef90_A0A8H8X2S8	HNHc domain-containing protein	NA
UHGV-0041979_18	eggNOG-mapper	797302.Halru_0436	COG1403 Restriction endonuclease	NA
UHGV-0041979_18	PADLOC	ZorE2_00001	HNH endonuclease	Zorya
UHGV-0041979_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0041979_19	PHROG	phrog_2936	NA	unknown function
UHGV-0041979_20	PHROG	phrog_492	NA	unknown function
UHGV-0041979_20	eggNOG-mapper	571.MC52_01595	NA	NA
UHGV-0041979_21	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0041979_21	UniRef90	UniRef90_A0A1D8JY28	Methyltransferase	NA
UHGV-0041979_21	eggNOG-mapper	571.MC52_01600	methyltransferase	NA
UHGV-0041979_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0041979_21	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0041979_21	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0041979_21	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0041979_22	PHROG	phrog_9799	NA	unknown function
UHGV-0041979_22	Structural annotation	PF01475, MF_01586, NF033788, COG0640	NA	NA
UHGV-0041979_23	PHROG	phrog_4838	NA	unknown function
UHGV-0041979_23	UniRef90	UniRef90_UPI0015E12572	NA	NA
UHGV-0041979_23	eggNOG-mapper	517433.PanABDRAFT_2903	NA	NA
UHGV-0041979_24	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0041979_24	eggNOG-mapper	215158.Q858C6_BPE15	NA	NA
UHGV-0041979_25	PHROG	phrog_3469	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0041979_25	UniRef90	UniRef90_A0A378BY39	Error-prone repair protein UmuD	NA
UHGV-0041979_25	eggNOG-mapper	1115512.EH105704_01_02050	NA	NA
UHGV-0041979_25	Structural annotation	PF16452, MF_00015, NF007621, COG1974	NA	NA
UHGV-0041979_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0041979_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0041979_26	UniRef90	UniRef90_A0A5D3JUW0	Terminase small subunit	NA
UHGV-0041979_26	eggNOG-mapper	1327941.T1S9X4_9CAUD	Terminase small subunit	NA
UHGV-0041979_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0041979_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0041979_27	PHROG	phrog_5902	NA	unknown function
UHGV-0041979_27	UniRef90	UniRef90_A0A2J0PRI2	Terminase	NA
UHGV-0041979_27	eggNOG-mapper	215158.Q858H3_BPE15	NA	NA
UHGV-0041979_27	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0041979_28	PHROG	phrog_35327	NA	unknown function
UHGV-0041979_28	eggNOG-mapper	520999.PROVALCAL_02038	NA	NA
UHGV-0041979_30	PHROG	phrog_831	NA	unknown function
UHGV-0041979_30	UniRef90	UniRef90_A0A069FLF3	NA	NA
UHGV-0041979_30	eggNOG-mapper	1115515.EV102420_06_00310	NA	NA
UHGV-0041979_31	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0041979_31	UniRef90	UniRef90_A0A482MEW8	Tail protein	NA
UHGV-0041979_31	eggNOG-mapper	1124654.G9L6C2_9CAUD	Bacteriophage head to tail connecting protein	NA
UHGV-0041979_31	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0041979_31	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0041979_32	PHROG	phrog_528	NA	unknown function
UHGV-0041979_32	UniRef90	UniRef90_A0A0M3F6P5	NA	NA
UHGV-0041979_32	eggNOG-mapper	1327941.T1S9X5_9CAUD	NA	NA
UHGV-0041979_33	PHROG	phrog_4366	head fiber protein	head and packaging
UHGV-0041979_33	UniRef90	UniRef90_A0A1V8NS87	Phenylalanyl-tRNA synthetase subunit beta	NA
UHGV-0041979_34	PHROG	phrog_458	protease	other
UHGV-0041979_34	UniRef90	UniRef90_UPI0006594F74	peptidase	NA
UHGV-0041979_34	eggNOG-mapper	1124654.G9L6C4_9CAUD	peptidase activity	NA
UHGV-0041979_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-0041979_35	UniRef90	UniRef90_A0A0M3F638	NA	NA
UHGV-0041979_35	eggNOG-mapper	343516.Q287A8_9CAUD	viral capsid	NA
UHGV-0041979_35	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0041979_35	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0041979_36	PHROG	phrog_427	NA	unknown function
UHGV-0041979_36	eggNOG-mapper	1124654.G9L6C6_9CAUD	NA	NA
UHGV-0041979_36	Pfam	PF21190	Bbp16	Bbp16
UHGV-0041979_36	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0041979_37	PHROG	phrog_590	NA	unknown function
UHGV-0041979_37	eggNOG-mapper	343516.Q287A6_9CAUD	NA	NA
UHGV-0041979_38	PHROG	phrog_825	NA	unknown function
UHGV-0041979_38	eggNOG-mapper	1115515.EV102420_06_00390	NA	NA
UHGV-0041979_38	Pfam	PF21628	Major coat protein-like	Gp10-like
UHGV-0041979_38	Structural annotation	PF21628	NA	NA
UHGV-0041979_39	PHROG	phrog_394	tail protein	tail
UHGV-0041979_39	UniRef90	UniRef90_A0A193GYT2	Putative adaptor protein	NA
UHGV-0041979_39	eggNOG-mapper	343516.Q287A4_9CAUD	Pfam:Tube	NA
UHGV-0041979_39	Structural annotation	PF17212	NA	NA
UHGV-0041979_40	PHROG	phrog_376	tail protein	tail
UHGV-0041979_40	UniRef90	UniRef90_A0A193GZ54	Putative head closure protein	NA
UHGV-0041979_40	eggNOG-mapper	215158.Q858G3_BPE15	NA	NA
UHGV-0041979_40	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0041979_41	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0041979_41	UniRef90	UniRef90_Q858G2	Acetyltransferase	NA
UHGV-0041979_41	eggNOG-mapper	1327941.T1S9F9_9CAUD	NA	NA
UHGV-0041979_41	Structural annotation	PF11039, MF_02210, NF011709, COG0456	NA	NA
UHGV-0041979_42	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0041979_42	eggNOG-mapper	343516.Q287A1_9CAUD	NA	NA
UHGV-0041979_42	Structural annotation	PF07321, NF041271	NA	NA
UHGV-0041979_43	PHROG	phrog_992	head protein	head and packaging
UHGV-0041979_43	UniRef90	UniRef90_UPI00044E70D4	bacteriophage protein	NA
UHGV-0041979_43	eggNOG-mapper	215158.Q858G0_BPE15	NA	NA
UHGV-0041979_44	PHROG	phrog_1145	NA	unknown function
UHGV-0041979_44	UniRef90	UniRef90_A0A4P0Z8A7	NA	NA
UHGV-0041979_44	eggNOG-mapper	215158.Q858F9_BPE15	NA	NA
UHGV-0041979_45	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0041979_45	UniRef90	UniRef90_A0A345IRI7	Protein 17	NA
UHGV-0041979_45	eggNOG-mapper	517433.PanABDRAFT_3525	NA	NA
UHGV-0041979_46	PHROG	phrog_29212	NA	unknown function
UHGV-0041979_47	PHROG	phrog_450	NA	unknown function
UHGV-0041979_47	UniRef90	UniRef90_A0A140RUV2	Anti-repressor protein	NA
UHGV-0041979_47	eggNOG-mapper	1327941.T1SA45_9CAUD	NA	NA
UHGV-0041979_48	PHROG	phrog_15695	tail fiber protein	tail
UHGV-0041979_48	UniRef90	UniRef90_A0A483NHQ3	Peptidase S74 domain-containing protein	NA
UHGV-0041979_48	eggNOG-mapper	1344012.ATMI01000056_gene1749	NA	NA
UHGV-0041979_49	KOfam	K13663	gumF; acyltransferase [EC:2.3.1.-]	NA
UHGV-0041979_49	UniRef90	UniRef90_A0A483NEC3	Acyltransferase	NA
UHGV-0041979_49	eggNOG-mapper	1056820.KB900671_gene2463	Acyltransferase family	NA
UHGV-0041979_49	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0041979_49	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0041979_49	Structural annotation	PF01757, MF_01066, NF042426, COG3274	NA	NA
UHGV-0041979_50	PHROG	phrog_27301	NA	unknown function
UHGV-0041979_50	UniRef90	UniRef90_UPI000BDA06FB	putative holin	NA
UHGV-0041979_50	eggNOG-mapper	215158.Q858F2_BPE15	Pfam:Phage_holin_8	NA
UHGV-0041979_50	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0041979_50	Structural annotation	PF16931	NA	NA
UHGV-0041979_51	PHROG	phrog_217	holin	lysis
UHGV-0041979_51	UniRef90	UniRef90_A0A2J5PRU8	Phage holin family protein	NA
UHGV-0041979_51	eggNOG-mapper	343516.Q286Z0_9CAUD	Pfam:Phage_holin_3_7	NA
UHGV-0041979_51	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0041979_52	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0041979_52	PHROG	phrog_181	endolysin	lysis
UHGV-0041979_52	UniRef90	UniRef90_A0A2J5PS89	Endolysin	NA
UHGV-0041979_52	eggNOG-mapper	215158.Q858F0_BPE15	chitinase activity	NA
UHGV-0041979_52	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0041979_52	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0041979_53	PHROG	phrog_312	Rz-like spanin	lysis
UHGV-0041979_53	UniRef90	UniRef90_A0A837KDB0	Endopeptidase	NA
UHGV-0041979_53	eggNOG-mapper	215158.Q858E9_BPE15	NA	NA
UHGV-0041979_53	Pfam	PF10721	NA	DUF2514
UHGV-0041979_53	Structural annotation	PF10721	NA	NA