UHGV-0042033

Genome information

Genome length 28,187 bps

CDS count 49

Completeness 70.72% (medium-quality)

geNomad score 0.9588

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042033
vOTU ID	vOTU-024822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187
BioSample	SAMD00036386
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9588
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-0.35
Jumbo phage	No

Genome content
Genome length	28,187 bps
GC content	50.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	87.21%
Average CDS length	504.18 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042033_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0042033_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0042033_1	UniRef90	UniRef90_A0A0D8J1P7	Helix-turn-helix domain-containing protein	NA
UHGV-0042033_1	eggNOG-mapper	665956.HMPREF1032_02110	DNA-binding helix-turn-helix protein	NA
UHGV-0042033_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042033_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0042033_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0042033_1	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0042033_3	KOfam	K20379	cad; sex pheromone cAD1	NA
UHGV-0042033_3	UniRef90	UniRef90_G9RS50	FMN_bind domain-containing protein	NA
UHGV-0042033_3	eggNOG-mapper	665956.HMPREF1032_02112	FMN-binding domain	NA
UHGV-0042033_3	Pfam	PF04205	FMN-binding domain	FMN_bind
UHGV-0042033_3	COG	COG4939	Membrane-anchored lipoprotein Tpp15, major membrane immunogen	NA
UHGV-0042033_4	KOfam	K14059	int; integrase	NA
UHGV-0042033_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0042033_4	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-0042033_4	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0042033_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0042033_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042033_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042033_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0042033_5	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0042033_5	UniRef90	UniRef90_UPI00130D873A	Abi family protein	NA
UHGV-0042033_5	eggNOG-mapper	469617.FUAG_02687	Abi-like protein	NA
UHGV-0042033_5	PADLOC	AbiD	AbiD	Abi
UHGV-0042033_5	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0042033_5	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0042033_5	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0042033_6	PHROG	phrog_87	metallo-protease	other
UHGV-0042033_6	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0042033_6	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0042033_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0042033_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0042033_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0042033_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042033_7	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0042033_7	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0042033_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0042033_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0042033_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0042033_8	UniRef90	UniRef90_A0A316PLZ6	XRE family transcriptional regulator	NA
UHGV-0042033_8	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0042033_8	Structural annotation	TIGR03070	NA	NA
UHGV-0042033_12	AcrCatalog	cluster_35670	NA	NA
UHGV-0042033_12	Structural annotation	PF11998	NA	NA
UHGV-0042033_17	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0042033_18	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0042033_18	UniRef90	UniRef90_A0A372V4A8	ATP-binding protein	NA
UHGV-0042033_18	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0042033_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0042033_19	PHROG	phrog_18107	NA	unknown function
UHGV-0042033_19	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0042033_19	Structural annotation	PF05037	NA	NA
UHGV-0042033_20	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0042033_20	UniRef90	UniRef90_A0A372V4F7	ERCC4 domain-containing protein	NA
UHGV-0042033_20	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0042033_20	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0042033_20	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0042033_20	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0042033_21	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0042033_21	PHROG	phrog_11992	NA	unknown function
UHGV-0042033_21	UniRef90	UniRef90_A0A372V3Z0	ZnF_CHCC domain-containing protein	NA
UHGV-0042033_21	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0042033_21	PADLOC	drt-cluster192	DRT	DRT
UHGV-0042033_21	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0042033_21	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0042033_21	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0042033_22	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0042033_22	UniRef90	UniRef90_A0A372V3W4	NA	NA
UHGV-0042033_22	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0042033_22	Pfam	PF06048	NA	DUF927
UHGV-0042033_22	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0042033_22	COG	COG5519	NA	NA
UHGV-0042033_22	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0042033_25	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0042033_27	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0042033_27	UniRef90	UniRef90_A0A372V4B7	DNA cytosine methyltransferase	NA
UHGV-0042033_27	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0042033_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0042033_27	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0042033_28	PHROG	phrog_38832	NA	unknown function
UHGV-0042033_28	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0042033_28	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-0042033_29	Structural annotation	PF06257, NF011232	NA	NA
UHGV-0042033_30	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0042033_31	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0042033_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0042033_33	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0042033_33	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0042033_36	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0042033_36	eggNOG-mapper	397291.C804_05264	NA	NA
UHGV-0042033_36	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0042033_37	PHROG	phrog_25027	NA	unknown function
UHGV-0042033_37	UniRef90	UniRef90_A0A1Y3RPR4	ArdcN domain-containing protein	NA
UHGV-0042033_37	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0042033_37	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0042033_37	Structural annotation	PF08401	NA	NA
UHGV-0042033_38	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0042033_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0042033_39	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-0042033_39	UniRef90	UniRef90_UPI00164CD799	terminase small subunit	NA
UHGV-0042033_39	eggNOG-mapper	1121871.AUAT01000040_gene914	NA	NA
UHGV-0042033_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0042033_39	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0042033_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042033_40	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0042033_40	UniRef90	UniRef90_UPI00164BD94B	phage terminase large subunit	NA
UHGV-0042033_40	eggNOG-mapper	665956.HMPREF1032_03884	Terminase-like family	NA
UHGV-0042033_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042033_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042033_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0042033_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-0042033_42	eggNOG-mapper	665956.HMPREF1032_03886	NA	NA
UHGV-0042033_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0042033_45	PHROG	phrog_267	major head protein	head and packaging
UHGV-0042033_45	UniRef90	UniRef90_A0A3A9JXK2	P22 coat protein-protein 5 domain protein	NA
UHGV-0042033_45	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0042033_45	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0042033_46	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0042033_47	Structural annotation	PF20387	NA	NA
UHGV-0042033_48	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0042033_48	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0042033_48	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0042033_49	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA