UHGV-0042088

Genome information

Genome length 41,513 bps

CDS count 64

Completeness 96.78% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042088
vOTU ID	vOTU-060719
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_20565
BioSample	SAMEA2041928
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.7
Jumbo phage	No

Genome content
Genome length	41,513 bps
GC content	46.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.85%
Average CDS length	585.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042088_1	KOfam	K14059	int; integrase	NA
UHGV-0042088_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0042088_1	UniRef90	UniRef90_A0A396QHT0	Site-specific integrase	NA
UHGV-0042088_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0042088_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0042088_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042088_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042088_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0042088_2	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0042088_2	UniRef90	UniRef90_A0A0V8QJ55	zinc_ribbon_2 domain-containing protein	NA
UHGV-0042088_2	eggNOG-mapper	796945.HMPREF1145_0173	tRNA_anti-like	NA
UHGV-0042088_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0042088_2	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0042088_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0042088_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042088_4	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0042088_4	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042088_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042088_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042088_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0042088_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0042088_11	UniRef90	UniRef90_A0A7G9G713	Siphovirus Gp157 family protein	NA
UHGV-0042088_11	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0042088_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0042088_11	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0042088_12	PHROG	phrog_14970	NA	unknown function
UHGV-0042088_12	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0042088_12	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0042088_12	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0042088_13	PHROG	phrog_398	NA	unknown function
UHGV-0042088_13	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0042088_13	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0042088_13	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0042088_13	Structural annotation	PF16784	NA	NA
UHGV-0042088_14	Structural annotation	PF21715	NA	NA
UHGV-0042088_15	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042088_15	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0042088_15	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0042088_17	Structural annotation	PF04936	NA	NA
UHGV-0042088_18	PHROG	phrog_4433	NA	unknown function
UHGV-0042088_18	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0042088_18	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0042088_21	PHROG	phrog_4433	NA	unknown function
UHGV-0042088_21	UniRef90	UniRef90_A0A1C6I166	Collagen triple helix repeat (20 copies)	NA
UHGV-0042088_21	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0042088_21	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0042088_21	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0042088_24	KOfam	K03744	lemA; LemA protein	NA
UHGV-0042088_24	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0042088_24	UniRef90	UniRef90_A0A6N2WCF4	LemA family protein	NA
UHGV-0042088_24	eggNOG-mapper	742740.HMPREF9474_02293	LemA family	NA
UHGV-0042088_24	Pfam	PF04011	LemA family	LemA
UHGV-0042088_24	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0042088_24	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0042088_25	PHROG	phrog_3886	NA	unknown function
UHGV-0042088_25	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-0042088_26	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0042088_27	PHROG	phrog_33130	NA	unknown function
UHGV-0042088_27	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0042088_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0042088_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042088_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0042088_28	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0042088_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0042088_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0042088_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0042088_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0042088_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042088_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042088_28	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0042088_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0042088_29	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0042088_29	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0042088_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0042088_31	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0042088_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0042088_32	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0042088_32	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0042088_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0042088_32	Structural annotation	PF11114	NA	NA
UHGV-0042088_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0042088_33	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0042088_33	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0042088_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0042088_33	COG	COG2369	NA	NA
UHGV-0042088_33	Structural annotation	PF06152	NA	NA
UHGV-0042088_34	PHROG	phrog_3754	NA	unknown function
UHGV-0042088_34	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0042088_35	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0042088_35	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0042088_35	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0042088_35	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0042088_36	PHROG	phrog_21718	NA	unknown function
UHGV-0042088_36	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0042088_37	PHROG	phrog_22984	NA	unknown function
UHGV-0042088_38	PHROG	phrog_16490	NA	unknown function
UHGV-0042088_38	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0042088_39	PHROG	phrog_20016	NA	unknown function
UHGV-0042088_39	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0042088_39	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0042088_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0042088_40	PHROG	phrog_28802	NA	unknown function
UHGV-0042088_40	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0042088_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0042088_41	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0042088_41	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0042088_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0042088_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-0042088_42	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0042088_42	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0042088_42	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0042088_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0042088_43	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0042088_44	PHROG	phrog_1129	holin	lysis
UHGV-0042088_44	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0042088_44	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0042088_44	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0042088_44	Structural annotation	PF06946	NA	NA
UHGV-0042088_46	PHROG	phrog_8680	NA	unknown function
UHGV-0042088_46	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0042088_46	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0042088_46	Pfam	PF14386	NA	DUF4417
UHGV-0042088_46	Structural annotation	PF14386	NA	NA
UHGV-0042088_47	PHROG	phrog_3366	NA	unknown function
UHGV-0042088_47	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0042088_47	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0042088_48	PHROG	phrog_3266	tail completion	connector
UHGV-0042088_48	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0042088_48	Structural annotation	PF12691	NA	NA
UHGV-0042088_49	PHROG	phrog_3099	NA	unknown function
UHGV-0042088_49	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0042088_49	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0042088_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042088_50	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0042088_50	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0042088_50	Structural annotation	PF10666	NA	NA
UHGV-0042088_51	PHROG	phrog_706	NA	unknown function
UHGV-0042088_51	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0042088_51	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0042088_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0042088_51	Structural annotation	PF06854	NA	NA
UHGV-0042088_52	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0042088_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0042088_52	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0042088_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0042088_53	PHROG	phrog_1194	NA	unknown function
UHGV-0042088_53	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0042088_53	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0042088_54	PHROG	phrog_13879	NA	unknown function
UHGV-0042088_54	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0042088_54	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0042088_55	PHROG	phrog_18725	NA	unknown function
UHGV-0042088_55	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0042088_58	PHROG	phrog_18593	NA	unknown function
UHGV-0042088_58	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-0042088_58	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0042088_58	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0042088_58	Structural annotation	PF14600	NA	NA
UHGV-0042088_59	UniRef90	UniRef90_U2BK79	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0042088_59	eggNOG-mapper	1226325.HMPREF1548_00749	NA	NA
UHGV-0042088_60	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0042088_61	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0042088_61	UniRef90	UniRef90_UPI001C3A3ABC	NA	NA
UHGV-0042088_61	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0042088_61	Structural annotation	PF14359	NA	NA
UHGV-0042088_62	PHROG	phrog_918	NA	unknown function
UHGV-0042088_62	UniRef90	UniRef90_UPI0004D82A84	NA	NA
UHGV-0042088_62	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0042088_62	Pfam	PF19791	NA	DUF6275
UHGV-0042088_62	Structural annotation	PF19791	NA	NA
UHGV-0042088_63	KOfam	K07273	acm; lysozyme	NA
UHGV-0042088_63	PHROG	phrog_291	endolysin	lysis
UHGV-0042088_63	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-0042088_63	eggNOG-mapper	658086.HMPREF0994_03328	Glycosyl hydrolases family 25	NA
UHGV-0042088_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0042088_63	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0042088_63	Structural annotation	PF01183, TIGR00612, COG3757	NA	NA
UHGV-0042088_64	UniRef90	UniRef90_A0A4U8Q263	Putative membrane protein	NA
UHGV-0042088_64	eggNOG-mapper	1235790.C805_02524	NA	NA
UHGV-0042088_64	Pfam	PF06912	NA	DUF1275
UHGV-0042088_64	COG	COG3619	NA	NA