UHGV-0042193

Genome information

Genome length 34,802 bps

CDS count 52

Completeness 76.97% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042193
vOTU ID	vOTU-015504
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2209
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.8
Jumbo phage	No

Genome content
Genome length	34,802 bps
GC content	54.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.51%
Average CDS length	631.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042193_1	UniRef90	UniRef90_A0A0S2W0Q3	Glycoprotein gp2	NA
UHGV-0042193_1	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0042193_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0042193_2	PHROG	phrog_521	tail protein	tail
UHGV-0042193_2	UniRef90	UniRef90_A0A417BYZ7	NA	NA
UHGV-0042193_2	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0042193_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0042193_2	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0042193_2	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0042193_3	PHROG	phrog_1608	tail protein	tail
UHGV-0042193_3	UniRef90	UniRef90_A0A417BYX8	Phage tail protein	NA
UHGV-0042193_3	eggNOG-mapper	1408437.JNJN01000045_gene576	Baseplate J-like protein	NA
UHGV-0042193_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0042193_3	COG	COG3299	NA	NA
UHGV-0042193_3	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0042193_4	PHROG	phrog_120	baseplate protein	tail
UHGV-0042193_4	UniRef90	UniRef90_A0A3E2XZ30	NA	NA
UHGV-0042193_4	eggNOG-mapper	1408437.JNJN01000045_gene577	NA	NA
UHGV-0042193_4	Pfam	PF10934	NA	DUF2634
UHGV-0042193_4	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0042193_4	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0042193_5	PHROG	phrog_579	NA	unknown function
UHGV-0042193_5	UniRef90	UniRef90_A0A417TSE7	NA	NA
UHGV-0042193_5	Pfam	PF10844	NA	DUF2577
UHGV-0042193_5	Structural annotation	PF10844	NA	NA
UHGV-0042193_6	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0042193_6	PHROG	phrog_400	tail protein	tail
UHGV-0042193_6	UniRef90	UniRef90_A0A417IT88	Peptidase_M23 domain-containing protein	NA
UHGV-0042193_6	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0042193_6	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0042193_6	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0042193_6	Structural annotation	PF01551, PF05954, MF_02071, NF040883, NF033848, TIGR00413, COG0739, COG4379, COG3584	NA	NA
UHGV-0042193_7	KOfam	K19223	lytF, cwlE; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]	NA
UHGV-0042193_7	PHROG	phrog_380	endolysin	lysis
UHGV-0042193_7	UniRef90	UniRef90_A0A417HNW8	LysM domain-containing protein	NA
UHGV-0042193_7	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0042193_7	Pfam	PF01476	LysM domain	LysM
UHGV-0042193_7	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0042193_7	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0042193_8	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0042193_8	UniRef90	UniRef90_A0A417BYU2	TMP_3 domain-containing protein	NA
UHGV-0042193_8	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0042193_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0042193_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0042193_8	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0042193_8	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0042193_9	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0042193_9	UniRef90	UniRef90_A0A3E2XXX4	Phage portal protein	NA
UHGV-0042193_9	eggNOG-mapper	1408437.JNJN01000045_gene583	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0042193_9	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0042193_9	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0042193_10	PHROG	phrog_365	tail protein	tail
UHGV-0042193_10	UniRef90	UniRef90_UPI00164A7994	phage tail tube protein	NA
UHGV-0042193_10	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0042193_10	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0042193_10	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0042193_11	PHROG	phrog_279	tail sheath	tail
UHGV-0042193_11	UniRef90	UniRef90_A0A3E2XXT6	Phage tail protein	NA
UHGV-0042193_11	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0042193_11	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0042193_11	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0042193_11	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0042193_11	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0042193_12	PHROG	phrog_966	NA	unknown function
UHGV-0042193_12	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0042193_13	PHROG	phrog_525	NA	unknown function
UHGV-0042193_13	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0042193_13	eggNOG-mapper	1408437.JNJN01000045_gene587	NA	NA
UHGV-0042193_13	Pfam	PF20765	NA	DUF6838
UHGV-0042193_13	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0042193_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0042193_14	UniRef90	UniRef90_A0A417TTZ3	HK97 gp10 family phage protein	NA
UHGV-0042193_14	eggNOG-mapper	1408437.JNJN01000045_gene588	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0042193_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042193_14	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0042193_15	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0042193_15	UniRef90	UniRef90_UPI001B11203B	NA	NA
UHGV-0042193_15	eggNOG-mapper	1408437.JNJN01000045_gene589	NA	NA
UHGV-0042193_15	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0042193_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0042193_16	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-0042193_16	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0042193_16	Structural annotation	PF05135	NA	NA
UHGV-0042193_17	eggNOG-mapper	935836.JAEL01000086_gene51	NA	NA
UHGV-0042193_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-0042193_18	UniRef90	UniRef90_A0A3E2XZN2	Phage capsid protein	NA
UHGV-0042193_18	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0042193_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0042193_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0042193_19	UniRef90	UniRef90_UPI0004E27E71	phage scaffolding protein	NA
UHGV-0042193_19	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0042193_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0042193_19	Structural annotation	PF06810	NA	NA
UHGV-0042193_20	PHROG	phrog_29609	NA	unknown function
UHGV-0042193_20	UniRef90	UniRef90_A0A3R6V015	PBECR3 domain-containing protein	NA
UHGV-0042193_20	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0042193_20	COG	COG2369	NA	NA
UHGV-0042193_20	Structural annotation	PF18825, COG2929	NA	NA
UHGV-0042193_21	Structural annotation	PF07073, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-0042193_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0042193_23	UniRef90	UniRef90_A0A3E2XXY5	Phage_Mu_F domain-containing protein	NA
UHGV-0042193_23	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0042193_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0042193_23	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0042193_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0042193_23	COG	COG2369	NA	NA
UHGV-0042193_23	Structural annotation	PF03496, PF04233, MF_04141, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0042193_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0042193_24	UniRef90	UniRef90_A0A417BZ11	Phage portal protein	NA
UHGV-0042193_24	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0042193_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042193_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0042193_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0042193_25	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0042193_25	UniRef90	UniRef90_A0A845MZ56	Phage terminase large subunit	NA
UHGV-0042193_25	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0042193_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0042193_25	COG	COG5410	NA	NA
UHGV-0042193_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0042193_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0042193_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0042193_26	UniRef90	UniRef90_A0A3E2XYK7	Terminase small subunit	NA
UHGV-0042193_26	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0042193_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0042193_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0042193_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0042193_27	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-0042193_28	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-0042193_29	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0042193_29	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0042193_29	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0042193_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0042193_34	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0042193_34	UniRef90	UniRef90_A0A417TSH5	Methyltransferase	NA
UHGV-0042193_34	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0042193_34	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0042193_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0042193_34	COG	COG0863	DNA modification methylase	NA
UHGV-0042193_34	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0042193_37	UniRef90	UniRef90_A0A417TSI7	NA	NA
UHGV-0042193_37	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0042193_38	PHROG	phrog_1029	NA	unknown function
UHGV-0042193_38	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0042193_38	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0042193_39	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0042193_39	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0042193_39	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0042193_41	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0042193_41	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0042193_41	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0042193_41	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0042193_41	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0042193_41	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0042193_41	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0042193_42	PHROG	phrog_862	NA	unknown function
UHGV-0042193_42	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0042193_42	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0042193_43	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0042193_43	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042193_43	UniRef90	UniRef90_A0A3E2XY48	AAA_23 domain-containing protein	NA
UHGV-0042193_43	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0042193_43	Pfam	PF13476	AAA domain	AAA_23
UHGV-0042193_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0042193_43	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0042193_45	Structural annotation	PF11112	NA	NA
UHGV-0042193_46	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0042193_47	Structural annotation	PF09827, MF_01471, COG1343	NA	NA
UHGV-0042193_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0042193_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042193_49	UniRef90	UniRef90_A0A417TTU1	XRE family transcriptional regulator	NA
UHGV-0042193_49	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042193_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042193_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0042193_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0042193_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042193_50	UniRef90	UniRef90_A0A417TUS3	XRE family transcriptional regulator	NA
UHGV-0042193_50	eggNOG-mapper	1105031.HMPREF1141_3281	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042193_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042193_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042193_50	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0042193_51	KOfam	K14059	int; integrase	NA
UHGV-0042193_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0042193_51	UniRef90	UniRef90_A0A417BYT3	Site-specific integrase	NA
UHGV-0042193_51	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0042193_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0042193_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042193_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042193_51	Structural annotation	PF00589, MF_01808, NF002331, COG4973	NA	NA
UHGV-0042193_52	PHROG	phrog_21101	NA	unknown function
UHGV-0042193_52	UniRef90	UniRef90_A0A417KNT6	NA	NA
UHGV-0042193_52	eggNOG-mapper	1256908.HMPREF0373_02408	NA	NA
UHGV-0042193_52	Pfam	PF07866	NA	DUF1653
UHGV-0042193_52	COG	COG4728	NA	NA
UHGV-0042193_52	Structural annotation	PF07866, COG4728	NA	NA