UHGV-0042194

Genome information

Genome length 37,625 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042194
vOTU ID	vOTU-008863
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2210
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.25
Jumbo phage	No

Genome content
Genome length	37,625 bps
GC content	60.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.69%
Average CDS length	605.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042194_1	KOfam	K14059	int; integrase	NA
UHGV-0042194_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0042194_1	UniRef90	UniRef90_A0A417BRM6	Site-specific integrase	NA
UHGV-0042194_1	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0042194_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0042194_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042194_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042194_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0042194_2	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0042194_2	PHROG	phrog_38135	NA	unknown function
UHGV-0042194_2	UniRef90	UniRef90_A0A417TN60	NA	NA
UHGV-0042194_2	eggNOG-mapper	1151292.QEW_0647	NA	NA
UHGV-0042194_2	Pfam	PF14020	NA	DUF4236
UHGV-0042194_2	Pfam	PF07382	Histone H1-like nucleoprotein HC2	HC2
UHGV-0042194_2	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0042194_3	PHROG	phrog_87	metallo-protease	other
UHGV-0042194_3	UniRef90	UniRef90_A0A3E2XRF6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0042194_3	eggNOG-mapper	1226322.HMPREF1545_00086	NA	NA
UHGV-0042194_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0042194_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0042194_4	UniRef90	UniRef90_A0A417TPA6	XRE family transcriptional regulator	NA
UHGV-0042194_4	eggNOG-mapper	1094508.Tsac_2453	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042194_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042194_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0042194_6	UniRef90	UniRef90_A0A417BRQ8	XRE family transcriptional regulator	NA
UHGV-0042194_6	eggNOG-mapper	397291.C804_05455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042194_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042194_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0042194_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0042194_7	UniRef90	UniRef90_UPI000D1F26C7	helix-turn-helix domain-containing protein	NA
UHGV-0042194_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0042194_8	UniRef90	UniRef90_A0A417TNI1	XRE family transcriptional regulator	NA
UHGV-0042194_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0042194_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0042194_8	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0042194_10	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042194_10	Pfam	PF08279	HTH domain	HTH_11
UHGV-0042194_10	Pfam	PF12840	Helix-turn-helix domain	HTH_20
UHGV-0042194_10	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0042194_10	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0042194_11	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042194_11	UniRef90	UniRef90_A0A417W5J7	Helix-turn-helix domain-containing protein	NA
UHGV-0042194_11	eggNOG-mapper	1203606.HMPREF1526_01323	Helix-turn-helix domain	NA
UHGV-0042194_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0042194_11	Structural annotation	PF13730, NF033789, COG1846	NA	NA
UHGV-0042194_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0042194_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0042194_12	UniRef90	UniRef90_A0A417TPA4	DNA helicase	NA
UHGV-0042194_12	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0042194_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0042194_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0042194_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0042194_12	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0042194_13	Structural annotation	PF07870	NA	NA
UHGV-0042194_15	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0042194_15	Pfam	PF19575	Helix-turn-helix domain	HTH_58
UHGV-0042194_15	Structural annotation	PF02796	NA	NA
UHGV-0042194_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0042194_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0042194_16	UniRef90	UniRef90_A0A417TPB6	ParA family protein	NA
UHGV-0042194_16	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0042194_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-0042194_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0042194_16	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0042194_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0042194_17	PHROG	phrog_27290	NA	unknown function
UHGV-0042194_17	UniRef90	UniRef90_A0A417TPE0	ParB domain-containing protein	NA
UHGV-0042194_17	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0042194_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0042194_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0042194_17	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0042194_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0042194_20	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0042194_20	UniRef90	UniRef90_A0A417TSH5	Methyltransferase	NA
UHGV-0042194_20	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0042194_20	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0042194_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0042194_20	COG	COG0863	DNA modification methylase	NA
UHGV-0042194_20	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0042194_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042194_23	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0042194_23	Structural annotation	PF01446	NA	NA
UHGV-0042194_24	Structural annotation	PF15188	NA	NA
UHGV-0042194_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0042194_25	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0042194_25	UniRef90	UniRef90_A0A417TPF6	Methyltransferase	NA
UHGV-0042194_25	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0042194_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0042194_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0042194_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0042194_25	COG	COG0863	DNA modification methylase	NA
UHGV-0042194_25	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0042194_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0042194_26	UniRef90	UniRef90_A0A417TPF2	Phage terminase small subunit P27 family	NA
UHGV-0042194_26	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0042194_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0042194_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0042194_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0042194_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0042194_28	PHROG	phrog_474	phosphofructokinase	other
UHGV-0042194_28	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0042194_28	Pfam	PF19905	NA	DUF6378
UHGV-0042194_30	KOfam	K03744	lemA; LemA protein	NA
UHGV-0042194_30	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0042194_30	UniRef90	UniRef90_A0A417TP98	LemA family protein	NA
UHGV-0042194_30	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0042194_30	Pfam	PF04011	LemA family	LemA
UHGV-0042194_30	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0042194_30	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0042194_31	PHROG	phrog_3886	NA	unknown function
UHGV-0042194_31	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0042194_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0042194_33	UniRef90	UniRef90_A0A417BRN9	Terminase large subunit	NA
UHGV-0042194_33	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0042194_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0042194_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0042194_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0042194_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0042194_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0042194_36	UniRef90	UniRef90_A0A417BRY8	Phage portal protein	NA
UHGV-0042194_36	eggNOG-mapper	861450.HMPREF0080_02045	Phage portal protein	NA
UHGV-0042194_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0042194_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0042194_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0042194_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0042194_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0042194_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0042194_37	UniRef90	UniRef90_A0A417TPC2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0042194_37	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0042194_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0042194_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0042194_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0042194_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0042194_38	UniRef90	UniRef90_A0A417BRK5	Phage major capsid protein	NA
UHGV-0042194_38	eggNOG-mapper	1111454.HMPREF1250_0251	phage major capsid protein, HK97 family	NA
UHGV-0042194_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0042194_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0042194_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0042194_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0042194_39	UniRef90	UniRef90_A0A417TN82	Phage gp6-like head-tail connector protein	NA
UHGV-0042194_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0042194_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0042194_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0042194_40	UniRef90	UniRef90_A0A417BRM5	Head-tail adaptor protein	NA
UHGV-0042194_40	eggNOG-mapper	394503.Ccel_2954	Phage head-tail adaptor	NA
UHGV-0042194_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0042194_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0042194_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0042194_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0042194_41	UniRef90	UniRef90_UPI000E408174	HK97 gp10 family phage protein	NA
UHGV-0042194_41	eggNOG-mapper	1203606.HMPREF1526_01342	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0042194_41	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0042194_42	PHROG	phrog_525	NA	unknown function
UHGV-0042194_42	eggNOG-mapper	1203606.HMPREF1526_01343	NA	NA
UHGV-0042194_42	Pfam	PF20765	NA	DUF6838
UHGV-0042194_42	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0042194_43	PHROG	phrog_1480	tail sheath	tail
UHGV-0042194_43	UniRef90	UniRef90_A0A417TPA7	Phage tail protein	NA
UHGV-0042194_43	eggNOG-mapper	290402.Cbei_0914	Phage tail sheath C-terminal domain	NA
UHGV-0042194_43	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0042194_43	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0042194_44	PHROG	phrog_365	tail protein	tail
UHGV-0042194_44	UniRef90	UniRef90_A0A417TNL1	Terminase	NA
UHGV-0042194_44	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0042194_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0042194_44	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0042194_45	PHROG	phrog_400	tail protein	tail
UHGV-0042194_45	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0042194_45	eggNOG-mapper	1203606.HMPREF1526_01350	Late control gene D protein	NA
UHGV-0042194_45	COG	COG3500	NA	NA
UHGV-0042194_45	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0042194_46	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0042194_46	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-0042194_46	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0042194_48	PHROG	phrog_23464	NA	unknown function
UHGV-0042194_48	UniRef90	UniRef90_R8W0E5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0042194_48	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0042194_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0042194_48	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0042194_49	PHROG	phrog_23201	NA	unknown function
UHGV-0042194_49	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0042194_49	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0042194_49	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0042194_49	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0042194_50	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0042194_51	UniRef90	UniRef90_A0A417BRL2	NA	NA
UHGV-0042194_51	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0042194_51	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0042194_52	PHROG	phrog_6	baseplate protein	tail
UHGV-0042194_52	UniRef90	UniRef90_A0A417BRQ7	Baseplate J protein	NA
UHGV-0042194_52	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0042194_52	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0042194_52	COG	COG3299	NA	NA
UHGV-0042194_52	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0042194_53	PHROG	phrog_521	tail protein	tail
UHGV-0042194_53	UniRef90	UniRef90_A0A417BRT7	NA	NA
UHGV-0042194_53	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-0042194_53	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0042194_53	COG	COG3778	NA	NA
UHGV-0042194_53	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0042194_54	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0042194_54	Structural annotation	PF08931	NA	NA
UHGV-0042194_55	UniRef90	UniRef90_UPI001EE93DA4	XkdW family protein	NA
UHGV-0042194_55	eggNOG-mapper	1007096.BAGW01000036_gene2667	NA	NA
UHGV-0042194_56	PHROG	phrog_1382	NA	unknown function
UHGV-0042194_56	eggNOG-mapper	1336234.JAGN01000004_gene512	NA	NA