UHGV-0042222

Genome information

Genome length 27,211 bps

CDS count 48

Completeness 68.73% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042222
vOTU ID	vOTU-034753
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_10207
BioSample	SAMEA2042583
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.51
Jumbo phage	No

Genome content
Genome length	27,211 bps
GC content	28.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.59%
Average CDS length	526.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042222_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0042222_1	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0042222_3	UniRef90	UniRef90_A0A3G1KS68	INTEIN_C_TER domain-containing protein	NA
UHGV-0042222_3	eggNOG-mapper	509191.AEDB02000102_gene3725	RHS repeat-associated core domain	NA
UHGV-0042222_3	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0042222_3	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0042222_3	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0042222_5	PHROG	phrog_13879	NA	unknown function
UHGV-0042222_5	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0042222_5	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0042222_6	PHROG	phrog_1194	NA	unknown function
UHGV-0042222_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0042222_7	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0042222_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0042222_7	eggNOG-mapper	1232449.BAHV02000010_gene2723	domain protein	NA
UHGV-0042222_7	COG	COG1511	NA	NA
UHGV-0042222_7	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0042222_8	PHROG	phrog_26308	NA	unknown function
UHGV-0042222_8	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0042222_8	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0042222_8	COG	COG3103	NA	NA
UHGV-0042222_8	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0042222_10	Structural annotation	PF12363	NA	NA
UHGV-0042222_11	eggNOG-mapper	445972.ANACOL_01851	NA	NA
UHGV-0042222_11	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0042222_12	Structural annotation	PF05657	NA	NA
UHGV-0042222_13	eggNOG-mapper	665956.HMPREF1032_03623	NA	NA
UHGV-0042222_13	Structural annotation	TIGR01725	NA	NA
UHGV-0042222_14	eggNOG-mapper	445972.ANACOL_01848	NA	NA
UHGV-0042222_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0042222_15	eggNOG-mapper	445972.ANACOL_01847	NA	NA
UHGV-0042222_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0042222_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0042222_16	UniRef90	UniRef90_R7ITV5	Putative prophage Lp2 protein 40	NA
UHGV-0042222_16	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0042222_16	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0042222_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0042222_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0042222_17	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0042222_17	eggNOG-mapper	1423724.BAMM01000012_gene1365	NA	NA
UHGV-0042222_17	Pfam	PF14265	NA	DUF4355
UHGV-0042222_17	Structural annotation	PF14265	NA	NA
UHGV-0042222_18	AcrCatalog	cluster_73853	NA	NA
UHGV-0042222_21	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0042222_22	PHROG	phrog_4502	NA	unknown function
UHGV-0042222_22	eggNOG-mapper	268407.PWYN_12400	NA	NA
UHGV-0042222_22	Structural annotation	PF14083	NA	NA
UHGV-0042222_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0042222_23	UniRef90	UniRef90_R7IUE9	SPP1 family phage portal protein	NA
UHGV-0042222_23	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0042222_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042222_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0042222_24	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0042222_24	UniRef90	UniRef90_R7ITA5	Putative terminase large subunit	NA
UHGV-0042222_24	eggNOG-mapper	546275.FUSPEROL_02030	TIGRFAM Phage	NA
UHGV-0042222_24	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0042222_24	COG	COG5410	NA	NA
UHGV-0042222_25	PHROG	phrog_8148	terminase small subunit	head and packaging
UHGV-0042222_25	UniRef90	UniRef90_R7ITS8	Terminase large subunit	NA
UHGV-0042222_25	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-0042222_25	COG	COG5410	NA	NA
UHGV-0042222_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0042222_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0042222_26	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0042222_26	eggNOG-mapper	469618.FVAG_01302	Terminase small subunit	NA
UHGV-0042222_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0042222_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0042222_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0042222_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0042222_31	eggNOG-mapper	1121871.AUAT01000030_gene1019	NA	NA
UHGV-0042222_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0042222_31	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0042222_33	Structural annotation	PF14001, MF_01194, TIGR03318, COG5475	NA	NA
UHGV-0042222_36	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0042222_36	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0042222_36	UniRef90	UniRef90_A0A424N484	DNA methyltransferase	NA
UHGV-0042222_36	eggNOG-mapper	1235800.C819_00509	MT-A70	NA
UHGV-0042222_36	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0042222_36	Pfam	PF05063	MT-A70	MT-A70
UHGV-0042222_36	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0042222_36	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0042222_38	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0042222_38	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0042222_38	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0042222_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0042222_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0042222_39	PHROG	phrog_4973	NA	unknown function
UHGV-0042222_39	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0042222_39	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0042222_39	Structural annotation	PF14090, NF008549, COG4738	NA	NA
UHGV-0042222_40	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0042222_40	UniRef90	UniRef90_A0A315ZV02	Loader and inhibitor of G40P protein	NA
UHGV-0042222_40	Structural annotation	PF11417	NA	NA
UHGV-0042222_41	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0042222_41	UniRef90	UniRef90_UPI001D0B3316	replisome organizer	NA
UHGV-0042222_41	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0042222_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0042222_41	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0042222_42	PHROG	phrog_7566	NA	unknown function
UHGV-0042222_42	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0042222_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0042222_44	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0042222_44	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0042222_44	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0042222_45	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0042222_45	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0042222_46	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0042222_46	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0042222_46	Pfam	PF06378	NA	DUF1071
UHGV-0042222_46	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA