UHGV-0042240

Genome information

Genome length 36,117 bps

CDS count 55

Completeness 89.13% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042240
vOTU ID	vOTU-017546
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4347
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.97
Jumbo phage	No

Genome content
Genome length	36,117 bps
GC content	42.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.16%
Average CDS length	608.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042240_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0042240_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0042240_1	UniRef90	UniRef90_UPI0011853F05	recombinase family protein	NA
UHGV-0042240_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0042240_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0042240_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0042240_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0042240_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0042240_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0042240_2	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0042240_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0042240_3	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0042240_3	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0042240_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0042240_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042240_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0042240_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0042240_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0042240_6	UniRef90	UniRef90_UPI0015713293	phage antirepressor KilAC domain-containing protein	NA
UHGV-0042240_6	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0042240_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0042240_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0042240_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0042240_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0042240_7	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0042240_11	PHROG	phrog_5070	NA	unknown function
UHGV-0042240_11	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0042240_11	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0042240_11	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0042240_11	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0042240_11	Structural annotation	NF040481	NA	NA
UHGV-0042240_13	PHROG	phrog_30234	NA	unknown function
UHGV-0042240_13	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0042240_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0042240_15	UniRef90	UniRef90_A0A1C5YV83	AAA domain-containing protein	NA
UHGV-0042240_15	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0042240_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0042240_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0042240_17	PHROG	phrog_18107	NA	unknown function
UHGV-0042240_17	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0042240_17	Structural annotation	PF05037	NA	NA
UHGV-0042240_18	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0042240_18	UniRef90	UniRef90_A0A851IBF4	ERCC4 domain-containing protein	NA
UHGV-0042240_18	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0042240_18	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0042240_18	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0042240_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0042240_19	UniRef90	UniRef90_UPI000DC4536F	DnaD domain-containing protein	NA
UHGV-0042240_19	eggNOG-mapper	1111134.HMPREF1253_1417	Transcriptional regulator	NA
UHGV-0042240_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0042240_19	Structural annotation	PF12793, NF033788, COG0640	NA	NA
UHGV-0042240_20	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0042240_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0042240_20	UniRef90	UniRef90_A0A1I7HB00	AAA domain-containing protein	NA
UHGV-0042240_20	eggNOG-mapper	1298920.KI911353_gene2713	Participates in initiation and elongation during chromosome replication	NA
UHGV-0042240_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0042240_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0042240_20	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0042240_21	eggNOG-mapper	1235798.C817_03496	NA	NA
UHGV-0042240_22	Structural annotation	NF041290	NA	NA
UHGV-0042240_23	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0042240_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0042240_24	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0042240_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0042240_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0042240_24	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0042240_26	PHROG	phrog_15198	NA	unknown function
UHGV-0042240_26	UniRef90	UniRef90_A0A2N5PKF4	NA	NA
UHGV-0042240_26	Pfam	PF04448	NA	DUF551
UHGV-0042240_29	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0042240_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0042240_31	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0042240_31	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0042240_31	Structural annotation	PF02996	NA	NA
UHGV-0042240_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0042240_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0042240_32	UniRef90	UniRef90_A0A2N5PI15	Terminase small subunit	NA
UHGV-0042240_32	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0042240_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0042240_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0042240_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0042240_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042240_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0042240_33	UniRef90	UniRef90_A0A2N5P5F6	Terminase	NA
UHGV-0042240_33	eggNOG-mapper	1430331.EP10_10340	Phage terminase, large subunit	NA
UHGV-0042240_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0042240_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0042240_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042240_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042240_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0042240_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0042240_34	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-0042240_34	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0042240_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042240_34	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0042240_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0042240_35	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0042240_35	UniRef90	UniRef90_A0A2N5P5J9	Phage_Mu_F domain-containing protein	NA
UHGV-0042240_35	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0042240_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0042240_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0042240_35	COG	COG2369	NA	NA
UHGV-0042240_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0042240_36	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0042240_36	Structural annotation	PF10827	NA	NA
UHGV-0042240_37	PHROG	phrog_1233	NA	unknown function
UHGV-0042240_37	UniRef90	UniRef90_A0A855HLY8	Peptidase_M78 domain-containing protein	NA
UHGV-0042240_37	eggNOG-mapper	476272.RUMHYD_02850	NA	NA
UHGV-0042240_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0042240_37	Structural annotation	PF06114	NA	NA
UHGV-0042240_38	KOfam	K07584	NA	NA
UHGV-0042240_38	PHROG	phrog_4478	peptidase	other
UHGV-0042240_38	UniRef90	UniRef90_A0A415S8E3	Ribosomal-processing cysteine protease Prp	NA
UHGV-0042240_38	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0042240_38	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0042240_38	COG	COG2868	NA	NA
UHGV-0042240_38	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0042240_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0042240_39	UniRef90	UniRef90_A0A3A5TW83	NA	NA
UHGV-0042240_39	eggNOG-mapper	272558.10176153	NA	NA
UHGV-0042240_39	Pfam	PF14265	NA	DUF4355
UHGV-0042240_39	Structural annotation	PF14265	NA	NA
UHGV-0042240_40	PHROG	phrog_840	major head protein	head and packaging
UHGV-0042240_40	UniRef90	UniRef90_A0A2N5P5Q7	Phage capsid protein	NA
UHGV-0042240_40	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0042240_40	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0042240_41	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0042240_41	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0042240_41	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0042240_41	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0042240_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0042240_41	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0042240_41	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0042240_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0042240_42	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-0042240_42	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0042240_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0042240_42	Structural annotation	PF05135	NA	NA
UHGV-0042240_43	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0042240_43	eggNOG-mapper	1235798.C817_03474	NA	NA
UHGV-0042240_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0042240_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0042240_44	UniRef90	UniRef90_UPI00195DCB77	HK97 gp10 family phage protein	NA
UHGV-0042240_44	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0042240_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042240_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0042240_44	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0042240_45	PHROG	phrog_176	tail terminator	connector
UHGV-0042240_45	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0042240_45	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0042240_45	Structural annotation	PF11367	NA	NA
UHGV-0042240_46	PHROG	phrog_238	major tail protein	tail
UHGV-0042240_46	UniRef90	UniRef90_A0A2N5PI04	Phage major tail protein, TP901-1 family	NA
UHGV-0042240_46	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0042240_46	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0042240_46	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0042240_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042240_47	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0042240_47	UniRef90	UniRef90_A0A1M6RGW0	Phage tail assembly chaperone protein, TAC	NA
UHGV-0042240_47	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0042240_47	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0042240_47	Structural annotation	PF12363	NA	NA
UHGV-0042240_48	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0042240_48	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-0042240_48	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0042240_49	PHROG	phrog_1204	tail protein	tail
UHGV-0042240_49	UniRef90	UniRef90_UPI0006C09509	tape measure protein	NA
UHGV-0042240_49	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-0042240_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0042240_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0042240_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0042240_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0042240_50	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0042240_50	UniRef90	UniRef90_A0A415S8D0	Phage tail family protein	NA
UHGV-0042240_50	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0042240_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0042240_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0042240_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0042240_50	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0042240_51	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0042240_51	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0042240_51	UniRef90	UniRef90_UPI00156F0909	collagen-like protein	NA
UHGV-0042240_51	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0042240_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0042240_51	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0042240_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0042240_51	Structural annotation	PF14594, PF08931, PF19081, TIGR01665, COG4926	NA	NA
UHGV-0042240_52	PHROG	phrog_199	holin	lysis
UHGV-0042240_52	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0042240_52	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0042240_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0042240_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0042240_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0042240_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0042240_53	PHROG	phrog_918	NA	unknown function
UHGV-0042240_53	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0042240_53	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0042240_53	Pfam	PF19791	NA	DUF6275
UHGV-0042240_53	Structural annotation	PF19791	NA	NA
UHGV-0042240_55	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042240_55	PHROG	phrog_435	endolysin	lysis
UHGV-0042240_55	UniRef90	UniRef90_A0A2N5NRG3	MurNAc-LAA domain-containing protein	NA
UHGV-0042240_55	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0042240_55	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0042240_55	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042240_55	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA