UHGV-0042380

Genome information

Genome length 37,091 bps

CDS count 54

Completeness 92.06% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042380
vOTU ID	vOTU-064918
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3699
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44
Jumbo phage	No

Genome content
Genome length	37,091 bps
GC content	44.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.68%
Average CDS length	620.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042380_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042380_1	PHROG	phrog_1794	amidase	lysis
UHGV-0042380_1	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042380_1	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0042380_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0042380_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042380_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0042380_2	PHROG	phrog_199	holin	lysis
UHGV-0042380_2	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0042380_2	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0042380_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0042380_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0042380_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0042380_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0042380_3	PHROG	phrog_28526	NA	unknown function
UHGV-0042380_3	UniRef90	UniRef90_A0A3D4R9W1	Antitoxin	NA
UHGV-0042380_3	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0042380_6	PHROG	phrog_16164	NA	unknown function
UHGV-0042380_6	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0042380_7	PHROG	phrog_18110	NA	unknown function
UHGV-0042380_7	UniRef90	UniRef90_A0A1C6DYP3	Phage minor structural protein, N-terminal region	NA
UHGV-0042380_7	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0042380_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0042380_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0042380_7	COG	COG4926	Phage-related protein	NA
UHGV-0042380_8	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0042380_9	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0042380_9	PHROG	phrog_5218	NA	unknown function
UHGV-0042380_9	UniRef90	UniRef90_A0A1C6DY47	Phage-related minor tail protein	NA
UHGV-0042380_9	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0042380_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0042380_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0042380_11	PHROG	phrog_2115	tail protein	tail
UHGV-0042380_11	Structural annotation	PF11836	NA	NA
UHGV-0042380_12	PHROG	phrog_88	major tail protein	tail
UHGV-0042380_12	UniRef90	UniRef90_A0A1C6DYZ6	Phage major tail protein, phi13 family	NA
UHGV-0042380_12	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0042380_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0042380_12	COG	COG5492	NA	NA
UHGV-0042380_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0042380_13	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0042380_13	COG	COG5492	NA	NA
UHGV-0042380_13	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0042380_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0042380_14	UniRef90	UniRef90_A0A1C6DYP9	Phage protein, HK97 gp10 family	NA
UHGV-0042380_14	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0042380_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042380_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0042380_14	Structural annotation	TIGR01725	NA	NA
UHGV-0042380_15	PHROG	phrog_19734	NA	unknown function
UHGV-0042380_15	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0042380_15	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-0042380_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0042380_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0042380_16	PHROG	phrog_749	NA	unknown function
UHGV-0042380_16	UniRef90	UniRef90_UPI001C0F1EE0	head-tail connector protein	NA
UHGV-0042380_16	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-0042380_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0042380_17	UniRef90	UniRef90_A0A1C6DZ71	Phage major capsid protein, HK97 family	NA
UHGV-0042380_17	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0042380_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0042380_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0042380_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0042380_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0042380_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0042380_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0042380_18	UniRef90	UniRef90_A0A1C6DZF0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0042380_18	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0042380_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0042380_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0042380_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0042380_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0042380_19	UniRef90	UniRef90_A0A1C6E0D8	Phage portal protein, HK97 family	NA
UHGV-0042380_19	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0042380_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0042380_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0042380_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0042380_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0042380_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0042380_20	UniRef90	UniRef90_A0A1C6DZH3	Phage terminase-like protein, large subunit	NA
UHGV-0042380_20	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0042380_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0042380_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0042380_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0042380_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0042380_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042380_22	UniRef90	UniRef90_A0A1C6DZR4	HNH endonuclease	NA
UHGV-0042380_22	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0042380_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0042380_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0042380_22	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0042380_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0042380_23	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0042380_23	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0042380_23	Pfam	PF07374	NA	DUF1492
UHGV-0042380_23	Structural annotation	PF04545	NA	NA
UHGV-0042380_26	PHROG	phrog_8684	NA	unknown function
UHGV-0042380_26	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0042380_26	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0042380_26	Pfam	PF09643	YopX protein	YopX
UHGV-0042380_26	Pfam	PF04448	NA	DUF551
UHGV-0042380_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0042380_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0042380_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0042380_28	UniRef90	UniRef90_A0A1C6E0P5	Single-stranded DNA-binding protein	NA
UHGV-0042380_28	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-0042380_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0042380_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0042380_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0042380_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0042380_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0042380_29	PHROG	phrog_23707	NA	unknown function
UHGV-0042380_29	UniRef90	UniRef90_A0A1Q6KU34	NA	NA
UHGV-0042380_29	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0042380_29	Pfam	PF04448	NA	DUF551
UHGV-0042380_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0042380_30	PHROG	phrog_15982	NA	unknown function
UHGV-0042380_30	UniRef90	UniRef90_A7AY48	ParB domain-containing protein	NA
UHGV-0042380_30	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0042380_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0042380_30	Pfam	PF12961	NA	DUF3850
UHGV-0042380_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0042380_30	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0042380_31	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0042380_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0042380_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0042380_32	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0042380_32	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0042380_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0042380_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0042380_32	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0042380_33	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0042380_34	PHROG	phrog_824	NA	unknown function
UHGV-0042380_34	UniRef90	UniRef90_A0A414DFB5	VRR-NUC domain-containing protein	NA
UHGV-0042380_34	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0042380_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0042380_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042380_35	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0042380_35	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0042380_35	Structural annotation	PF21578	NA	NA
UHGV-0042380_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0042380_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0042380_37	UniRef90	UniRef90_A0A1C6E221	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0042380_37	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0042380_37	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0042380_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0042380_37	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0042380_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0042380_37	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0042380_49	PHROG	phrog_9607	NA	unknown function
UHGV-0042380_49	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0042380_49	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0042380_52	UniRef90	UniRef90_UPI00156DCD74	helix-turn-helix transcriptional regulator	NA
UHGV-0042380_52	eggNOG-mapper	903814.ELI_3237	sequence-specific DNA binding	NA
UHGV-0042380_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042380_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042380_54	eggNOG-mapper	180332.JTGN01000007_gene3629	NA	NA