UHGV-0042426

Genome information

vOTU vOTU-020933

Genome length 28,982 bps

CDS count 44

Completeness 76.24% (medium-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042426
vOTU ID	vOTU-020933
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_27388
BioSample	SAMEA2042628
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.23
Jumbo phage	No

Genome content
Genome length	28,982 bps
GC content	53.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.40%
Average CDS length	625.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042426_1	eggNOG-mapper	1232449.BAHV02000016_gene1815	NA	NA
UHGV-0042426_2	PHROG	phrog_22978	NA	unknown function
UHGV-0042426_2	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0042426_2	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0042426_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0042426_5	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0042426_5	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0042426_5	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0042426_6	Structural annotation	PF11650	NA	NA
UHGV-0042426_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0042426_7	UniRef90	UniRef90_UPI001D089F97	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0042426_7	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0042426_7	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0042426_7	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0042426_8	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0042426_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0042426_9	eggNOG-mapper	1408437.JNJN01000001_gene1708	NA	NA
UHGV-0042426_9	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0042426_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042426_11	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0042426_11	UniRef90	UniRef90_A0A8F2F0S5	Phage terminase large subunit	NA
UHGV-0042426_11	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0042426_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042426_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042426_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0042426_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0042426_12	UniRef90	UniRef90_A0A0K1LMB1	Terminase small subunit	NA
UHGV-0042426_12	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0042426_12	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0042426_13	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0042426_13	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0042426_13	UniRef90	UniRef90_R5B4D7	YcfA family protein	NA
UHGV-0042426_13	eggNOG-mapper	1209989.TepiRe1_1141	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0042426_13	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0042426_13	Structural annotation	PF07927	NA	NA
UHGV-0042426_14	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0042426_14	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0042426_14	UniRef90	UniRef90_R9L6A1	HicB-like domain-containing protein	NA
UHGV-0042426_14	eggNOG-mapper	1235835.C814_03459	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0042426_14	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0042426_14	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0042426_14	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0042426_15	PHROG	phrog_31049	NA	unknown function
UHGV-0042426_15	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0042426_15	Structural annotation	TIGR01636	NA	NA
UHGV-0042426_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042426_16	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0042426_16	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-0042426_16	Structural annotation	PF21578	NA	NA
UHGV-0042426_22	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0042426_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0042426_22	UniRef90	UniRef90_A0A7X2XHM6	Restriction alleviation protein, Lar family	NA
UHGV-0042426_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0042426_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0042426_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0042426_22	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0042426_25	Structural annotation	PF21805	NA	NA
UHGV-0042426_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042426_26	UniRef90	UniRef90_UPI00030ECFE8	HNH endonuclease	NA
UHGV-0042426_26	eggNOG-mapper	1007096.BAGW01000031_gene126	HNH endonuclease	NA
UHGV-0042426_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0042426_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0042426_26	Structural annotation	COG1403	NA	NA
UHGV-0042426_30	PHROG	phrog_5781	NA	unknown function
UHGV-0042426_30	UniRef90	UniRef90_UPI000C7C87D9	NA	NA
UHGV-0042426_30	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0042426_30	Pfam	PF14359	NA	DUF4406
UHGV-0042426_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0042426_30	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0042426_33	PHROG	phrog_24368	NA	unknown function
UHGV-0042426_33	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0042426_36	PHROG	phrog_7566	NA	unknown function
UHGV-0042426_36	UniRef90	UniRef90_UPI001CD6F8EA	phosphoenolpyruvate carboxykinase	NA
UHGV-0042426_36	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0042426_37	Pfam	PF05339	NA	DUF739
UHGV-0042426_37	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0042426_37	Structural annotation	PF05339, TIGR00673, COG1476	NA	NA
UHGV-0042426_43	UniRef90	UniRef90_UPI0012B58364	Arc family DNA-binding protein	NA