UHGV-0042516

Genome information

Genome length 42,717 bps

CDS count 68

Completeness 95.80% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042516
vOTU ID	vOTU-071533
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_2557
BioSample	SAMEA728788
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.44
Jumbo phage	No

Genome content
Genome length	42,717 bps
GC content	37.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	88.72%
Average CDS length	561.44 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042516_1	PHROG	phrog_36464	NA	unknown function
UHGV-0042516_1	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0042516_1	Structural annotation	PF09035	NA	NA
UHGV-0042516_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0042516_5	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0042516_5	eggNOG-mapper	201846.Q6JM07_9CAUD	ERF superfamily	NA
UHGV-0042516_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0042516_5	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0042516_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0042516_6	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0042516_6	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0042516_6	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0042516_7	PHROG	phrog_7566	NA	unknown function
UHGV-0042516_7	UniRef90	UniRef90_A0A417V5I7	Phosphoenolpyruvate carboxykinase	NA
UHGV-0042516_7	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0042516_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0042516_8	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0042516_8	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0042516_8	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-0042516_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0042516_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0042516_8	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0042516_9	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042516_9	UniRef90	UniRef90_A0A416S3A2	Phage_rep_org_N domain-containing protein	NA
UHGV-0042516_9	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0042516_9	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0042516_10	PHROG	phrog_1123	NA	unknown function
UHGV-0042516_10	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0042516_10	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0042516_10	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0042516_11	UniRef90	UniRef90_UPI001BA881F1	transposase	NA
UHGV-0042516_11	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0042516_11	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0042516_12	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0042516_12	PHROG	phrog_4433	NA	unknown function
UHGV-0042516_12	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0042516_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0042516_12	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0042516_12	Structural annotation	NF007410	NA	NA
UHGV-0042516_14	eggNOG-mapper	1504823.CCMM01000008_gene1059	NA	NA
UHGV-0042516_18	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0042516_25	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042516_25	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-0042516_25	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0042516_25	Pfam	PF00847	AP2 domain	AP2
UHGV-0042516_25	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0042516_29	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0042516_30	PHROG	phrog_15863	NA	unknown function
UHGV-0042516_30	UniRef90	UniRef90_A0A417UWU3	J domain-containing protein	NA
UHGV-0042516_30	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0042516_30	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0042516_32	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0042516_32	UniRef90	UniRef90_UPI001BA79D8F	helix-turn-helix domain-containing protein	NA
UHGV-0042516_32	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0042516_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0042516_32	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0042516_36	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0042516_37	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0042516_37	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0042516_37	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0042516_37	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0042516_37	Structural annotation	PF16677	NA	NA
UHGV-0042516_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042516_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0042516_38	UniRef90	UniRef90_UPI00156DBE69	PBSX family phage terminase large subunit	NA
UHGV-0042516_38	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0042516_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0042516_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0042516_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042516_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042516_38	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0042516_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0042516_40	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0042516_40	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0042516_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0042516_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0042516_41	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0042516_41	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0042516_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0042516_41	COG	COG2369	NA	NA
UHGV-0042516_41	Structural annotation	PF06152	NA	NA
UHGV-0042516_42	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0042516_42	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0042516_43	PHROG	phrog_918	NA	unknown function
UHGV-0042516_43	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0042516_43	eggNOG-mapper	226185.EF_1459	NA	NA
UHGV-0042516_43	Pfam	PF19791	NA	DUF6275
UHGV-0042516_43	Structural annotation	PF19791	NA	NA
UHGV-0042516_44	PHROG	phrog_21718	NA	unknown function
UHGV-0042516_44	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0042516_46	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0042516_47	PHROG	phrog_20016	NA	unknown function
UHGV-0042516_47	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0042516_47	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0042516_47	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0042516_48	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0042516_50	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0042516_50	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0042516_50	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0042516_51	PHROG	phrog_247	major head protein	head and packaging
UHGV-0042516_51	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0042516_51	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0042516_51	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0042516_52	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0042516_52	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0042516_53	PHROG	phrog_3366	NA	unknown function
UHGV-0042516_53	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0042516_53	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0042516_54	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0042516_54	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0042516_54	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0042516_54	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0042516_54	Structural annotation	PF11114	NA	NA
UHGV-0042516_55	PHROG	phrog_3266	tail completion	connector
UHGV-0042516_55	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0042516_55	Structural annotation	PF12691	NA	NA
UHGV-0042516_56	PHROG	phrog_3099	NA	unknown function
UHGV-0042516_56	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0042516_56	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042516_57	PHROG	phrog_11299	NA	unknown function
UHGV-0042516_57	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0042516_57	Structural annotation	PF10666	NA	NA
UHGV-0042516_58	PHROG	phrog_706	NA	unknown function
UHGV-0042516_58	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0042516_58	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0042516_58	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0042516_58	Structural annotation	PF06854	NA	NA
UHGV-0042516_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0042516_59	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0042516_59	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0042516_59	COG	COG5412	Phage-related protein	NA
UHGV-0042516_60	PHROG	phrog_1194	NA	unknown function
UHGV-0042516_60	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0042516_61	PHROG	phrog_6616	tail protein	tail
UHGV-0042516_61	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0042516_61	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0042516_61	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0042516_62	PHROG	phrog_18444	NA	unknown function
UHGV-0042516_65	PHROG	phrog_962	holin	lysis
UHGV-0042516_65	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0042516_65	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0042516_65	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0042516_65	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0042516_65	COG	COG5546	NA	NA
UHGV-0042516_65	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-0042516_66	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0042516_66	PHROG	phrog_670	endolysin	lysis
UHGV-0042516_66	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0042516_66	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0042516_66	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0042516_66	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0042516_66	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0042516_66	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0042516_67	KOfam	K14059	int; integrase	NA
UHGV-0042516_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0042516_67	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0042516_67	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0042516_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042516_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042516_67	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0042516_68	COG	COG4640	NA	NA