UHGV-0042548

Genome information

Genome length 34,484 bps

CDS count 57

Completeness 94.55% (high-quality)

geNomad score 0.9555

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042548
vOTU ID	vOTU-014140
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3642
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.55% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9555
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.01
Jumbo phage	No

Genome content
Genome length	34,484 bps
GC content	28.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.51%
Average CDS length	537.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042548_2	UniRef90	UniRef90_UPI001C0D21DF	NA	NA
UHGV-0042548_2	Structural annotation	PF19865	NA	NA
UHGV-0042548_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042548_3	PHROG	phrog_435	endolysin	lysis
UHGV-0042548_3	UniRef90	UniRef90_A0A174D485	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042548_3	eggNOG-mapper	1414720.CBYM010000002_gene552	Ami_3	NA
UHGV-0042548_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0042548_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0042548_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042548_3	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0042548_4	PHROG	phrog_199	holin	lysis
UHGV-0042548_4	UniRef90	UniRef90_A0A174D4Y4	Toxin secretion/phage lysis holin	NA
UHGV-0042548_4	eggNOG-mapper	1414720.CBYM010000040_gene1662	Bacteriophage holin family	NA
UHGV-0042548_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0042548_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0042548_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0042548_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0042548_5	PHROG	phrog_16573	NA	unknown function
UHGV-0042548_5	UniRef90	UniRef90_A0A174D4S5	Choline binding protein	NA
UHGV-0042548_5	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0042548_5	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0042548_5	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0042548_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0042548_6	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0042548_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0042548_6	UniRef90	UniRef90_A0A174D559	Phage structural protein	NA
UHGV-0042548_6	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0042548_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0042548_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0042548_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0042548_6	COG	COG4926	Phage-related protein	NA
UHGV-0042548_6	Structural annotation	PF14594, TIGR01665, COG4926, COG3942	NA	NA
UHGV-0042548_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0042548_7	UniRef90	UniRef90_A0A174D8K9	Phage tail component	NA
UHGV-0042548_7	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0042548_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0042548_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0042548_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0042548_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0042548_8	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0042548_8	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0042548_8	UniRef90	UniRef90_A0A174D9E5	Phage-related protein-like protein	NA
UHGV-0042548_8	eggNOG-mapper	904144.AEJD01000006_gene569	phage tail tape measure protein	NA
UHGV-0042548_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0042548_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0042548_8	Structural annotation	PF10145, PF05384, TIGR01760, TIGR02559, COG5280	NA	NA
UHGV-0042548_10	Structural annotation	PF11836	NA	NA
UHGV-0042548_11	PHROG	phrog_88	major tail protein	tail
UHGV-0042548_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0042548_12	Structural annotation	PF05657	NA	NA
UHGV-0042548_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0042548_14	UniRef90	UniRef90_A0A174D5R9	Phage head-tail adaptor	NA
UHGV-0042548_14	eggNOG-mapper	536233.CLO_1365	Phage head-tail joining protein	NA
UHGV-0042548_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0042548_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0042548_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0042548_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0042548_15	UniRef90	UniRef90_A0A174D5E0	NA	NA
UHGV-0042548_15	eggNOG-mapper	394503.Ccel_2955	Phage gp6-like head-tail connector protein	NA
UHGV-0042548_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0042548_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0042548_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0042548_16	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0042548_16	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0042548_16	UniRef90	UniRef90_A0A174D6L8	Collagen triple helix repeat (20 copies)	NA
UHGV-0042548_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0042548_16	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0042548_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0042548_17	UniRef90	UniRef90_A0A174D5U9	Phage major capsid protein, HK97 family	NA
UHGV-0042548_17	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-0042548_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0042548_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0042548_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0042548_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0042548_18	KOfam	K06904	NA	NA
UHGV-0042548_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0042548_18	UniRef90	UniRef90_A0A174DA75	Phage prohead protease, HK97 family	NA
UHGV-0042548_18	eggNOG-mapper	632245.CLP_2616	Phage prohead protease, HK97 family	NA
UHGV-0042548_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0042548_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0042548_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0042548_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0042548_19	UniRef90	UniRef90_A0A174D612	Phage portal protein, HK97 family	NA
UHGV-0042548_19	eggNOG-mapper	1262449.CP6013_1040	Phage portal protein, HK97 family	NA
UHGV-0042548_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0042548_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0042548_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0042548_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0042548_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0042548_21	UniRef90	UniRef90_A0A174D676	Terminase	NA
UHGV-0042548_21	eggNOG-mapper	632245.CLP_2619	Terminase	NA
UHGV-0042548_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0042548_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0042548_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0042548_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0042548_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0042548_22	UniRef90	UniRef90_A0A174DAK8	Phage terminase, small subunit, P27 family	NA
UHGV-0042548_22	eggNOG-mapper	903814.ELI_3118	Phage terminase, small subunit	NA
UHGV-0042548_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0042548_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0042548_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0042548_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0042548_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042548_23	UniRef90	UniRef90_A0A174D6F0	HNH endonuclease domain-containing protein	NA
UHGV-0042548_23	eggNOG-mapper	1195236.CTER_5117	HNH endonuclease	NA
UHGV-0042548_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0042548_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0042548_25	PHROG	phrog_216	integrase	integration and excision
UHGV-0042548_25	UniRef90	UniRef90_A0A174DAV8	Integrase	NA
UHGV-0042548_25	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-0042548_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042548_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042548_25	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0042548_26	PHROG	phrog_3928	NA	unknown function
UHGV-0042548_26	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0042548_27	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0042548_27	UniRef90	UniRef90_A0A174D7N9	Putative alternative sigma factor RpoH	NA
UHGV-0042548_27	eggNOG-mapper	1443122.Z958_05945	NA	NA
UHGV-0042548_27	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0042548_27	Structural annotation	PF08281, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0042548_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0042548_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0042548_29	UniRef90	UniRef90_A0A174DBC4	Integrase/recombinase (XerC/CodV family)	NA
UHGV-0042548_29	eggNOG-mapper	1211817.CCAT010000049_gene2471	Belongs to the 'phage' integrase family	NA
UHGV-0042548_29	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0042548_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042548_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0042548_29	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0042548_32	eggNOG-mapper	1414720.CBYM010000040_gene1631	NA	NA
UHGV-0042548_34	eggNOG-mapper	1414720.CBYM010000040_gene1631	NA	NA
UHGV-0042548_38	PHROG	phrog_17499	NA	unknown function
UHGV-0042548_38	UniRef90	UniRef90_A0A174D8Q8	Putative CDC2L2 protein	NA
UHGV-0042548_38	eggNOG-mapper	1414720.CBYM010000040_gene1634	NA	NA
UHGV-0042548_39	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-0042548_45	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0042548_45	UniRef90	UniRef90_A0A174D896	Gp49-like protein	NA
UHGV-0042548_45	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0042548_45	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0042548_45	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0042548_45	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0042548_47	UniRef90	UniRef90_A0A174D8K3	Spo0E like sporulation regulatory protein	NA
UHGV-0042548_47	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0042548_47	Structural annotation	PF09388	NA	NA
UHGV-0042548_48	PHROG	phrog_12396	NA	unknown function
UHGV-0042548_48	eggNOG-mapper	1305836.AXVE01000008_gene1194	NA	NA
UHGV-0042548_49	UniRef90	UniRef90_UPI000C0827A1	TFIIB-type zinc ribbon-containing protein	NA
UHGV-0042548_50	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0042548_50	UniRef90	UniRef90_A0A174DDH4	Phage regulatory protein, Rha family	NA
UHGV-0042548_50	eggNOG-mapper	536232.CLM_1619	ORF6C domain	NA
UHGV-0042548_50	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0042548_50	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0042548_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0042548_50	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0042548_52	UniRef90	UniRef90_A0A174D8U5	DNA-binding protein	NA
UHGV-0042548_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042548_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042548_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0042548_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042548_53	UniRef90	UniRef90_A0A174DCZ8	Putative transcriptional regulator	NA
UHGV-0042548_53	eggNOG-mapper	1415774.U728_785	sequence-specific DNA binding	NA
UHGV-0042548_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0042548_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042548_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0042548_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0042548_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0042548_54	PHROG	phrog_95	integrase	integration and excision
UHGV-0042548_54	UniRef90	UniRef90_A0A174D9S1	Resolvase	NA
UHGV-0042548_54	eggNOG-mapper	1415774.U728_786	Resolvase, N terminal domain	NA
UHGV-0042548_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0042548_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-0042548_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0042548_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0042548_54	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0042548_55	KOfam	K04034	bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]	NA
UHGV-0042548_55	UniRef90	UniRef90_A0A174DE29	Cobalamin B12-binding domain-containing protein	NA
UHGV-0042548_55	eggNOG-mapper	1414720.CBYM010000006_gene1267	Radical SAM	NA
UHGV-0042548_55	Pfam	PF02310	B12 binding domain	B12-binding
UHGV-0042548_55	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0042548_56	eggNOG-mapper	1414720.CBYM010000006_gene1268	NA	NA
UHGV-0042548_57	UniRef90	UniRef90_A0A174DA84	Glucose / sorbosone dehydrogenase	NA
UHGV-0042548_57	eggNOG-mapper	1414720.CBYM010000006_gene1269	pyrroloquinoline quinone binding	NA
UHGV-0042548_57	COG	COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	NA