UHGV-0042659

Genome information

Genome length 33,343 bps

CDS count 39

Completeness 74.79% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042659
vOTU ID	vOTU-017402
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_342
BioSample	NA
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.29
Jumbo phage	No

Genome content
Genome length	33,343 bps
GC content	40.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	87.93%
Average CDS length	754.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042659_1	eggNOG-mapper	428126.CLOSPI_01538	NA	NA
UHGV-0042659_1	PADLOC	ThsA1_00007	Macro domain	Thoeris
UHGV-0042659_1	Pfam	PF20016	Thoeris protein ThsA, Macro domain	ThsA_Macro
UHGV-0042659_2	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0042659_2	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0042659_2	UniRef90	UniRef90_A0A416MIH9	Group II intron reverse transcriptase/maturase	NA
UHGV-0042659_2	eggNOG-mapper	293826.Amet_1411	Reverse transcriptase	NA
UHGV-0042659_2	PADLOC	PtuC2_00002	Reverse transcriptase	Septu
UHGV-0042659_2	Pfam	PF13655	N-terminal domain of reverse transcriptase	RVT_N
UHGV-0042659_2	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0042659_2	Pfam	PF08388	Group II intron, maturase-specific domain	GIIM
UHGV-0042659_2	NCBIFam	TIGR04416.1	group II intron reverse transcriptase/maturase	NA
UHGV-0042659_2	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0042659_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042659_3	PHROG	phrog_435	endolysin	lysis
UHGV-0042659_3	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-0042659_3	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042659_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0042659_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0042659_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042659_3	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0042659_4	PHROG	phrog_199	holin	lysis
UHGV-0042659_4	UniRef90	UniRef90_UPI0015BD1626	phage holin family protein	NA
UHGV-0042659_4	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0042659_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0042659_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0042659_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0042659_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0042659_5	PHROG	phrog_1382	NA	unknown function
UHGV-0042659_5	eggNOG-mapper	742740.HMPREF9474_02334	NA	NA
UHGV-0042659_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0042659_6	PHROG	phrog_1382	NA	unknown function
UHGV-0042659_6	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-0042659_6	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0042659_6	Structural annotation	NF040910	NA	NA
UHGV-0042659_7	PHROG	phrog_18126	NA	unknown function
UHGV-0042659_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0042659_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0042659_8	UniRef90	UniRef90_UPI00189B37FF	RNA-directed DNA polymerase	NA
UHGV-0042659_8	eggNOG-mapper	742740.HMPREF9474_02336	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0042659_8	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0042659_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0042659_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0042659_8	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0042659_9	PHROG	phrog_5302	tail protein	tail
UHGV-0042659_9	UniRef90	UniRef90_UPI0009A6D48C	phage tail protein	NA
UHGV-0042659_9	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0042659_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0042659_9	Structural annotation	PF12571, COG1262	NA	NA
UHGV-0042659_10	PHROG	phrog_521	tail protein	tail
UHGV-0042659_10	UniRef90	UniRef90_UPI001D116C04	YmfQ family protein	NA
UHGV-0042659_10	eggNOG-mapper	742740.HMPREF9474_02338	NA	NA
UHGV-0042659_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0042659_10	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0042659_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0042659_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0042659_11	UniRef90	UniRef90_UPI001898B31C	baseplate J/gp47 family protein	NA
UHGV-0042659_11	eggNOG-mapper	742740.HMPREF9474_02339	Baseplate J-like protein	NA
UHGV-0042659_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0042659_11	COG	COG3299	NA	NA
UHGV-0042659_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0042659_12	PHROG	phrog_120	baseplate protein	tail
UHGV-0042659_12	UniRef90	UniRef90_A0A844DV15	NA	NA
UHGV-0042659_12	eggNOG-mapper	1235793.C809_01947	NA	NA
UHGV-0042659_12	Pfam	PF10934	NA	DUF2634
UHGV-0042659_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0042659_12	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0042659_13	PHROG	phrog_579	NA	unknown function
UHGV-0042659_13	UniRef90	UniRef90_UPI001F2CF1A1	NA	NA
UHGV-0042659_13	eggNOG-mapper	742740.HMPREF9474_02341	NA	NA
UHGV-0042659_13	Pfam	PF10844	NA	DUF2577
UHGV-0042659_13	Structural annotation	PF10844	NA	NA
UHGV-0042659_14	PHROG	phrog_400	tail protein	tail
UHGV-0042659_14	UniRef90	UniRef90_UPI001C0377FD	hydrolase	NA
UHGV-0042659_14	eggNOG-mapper	742740.HMPREF9474_02342	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0042659_14	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0042659_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0042659_15	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042659_15	PHROG	phrog_380	endolysin	lysis
UHGV-0042659_15	UniRef90	UniRef90_A0A6L9HGB4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0042659_15	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0042659_15	Pfam	PF01476	LysM domain	LysM
UHGV-0042659_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0042659_15	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0042659_16	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0042659_16	UniRef90	UniRef90_UPI001A9B632B	tape measure protein	NA
UHGV-0042659_16	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0042659_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0042659_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0042659_16	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0042659_17	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0042659_17	UniRef90	UniRef90_D4M0Z0	Phage XkdN-like protein	NA
UHGV-0042659_17	eggNOG-mapper	742740.HMPREF9474_02345	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0042659_17	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0042659_17	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0042659_18	PHROG	phrog_365	tail protein	tail
UHGV-0042659_18	UniRef90	UniRef90_A0A7U9MZH5	Phage-like element PBSX protein XkdM	NA
UHGV-0042659_18	eggNOG-mapper	742740.HMPREF9474_02346	Phage tail tube protein	NA
UHGV-0042659_18	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0042659_18	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0042659_19	PHROG	phrog_279	tail sheath	tail
UHGV-0042659_19	UniRef90	UniRef90_A0A844DUR4	Phage tail protein	NA
UHGV-0042659_19	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0042659_19	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0042659_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0042659_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0042659_19	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0042659_20	PHROG	phrog_966	NA	unknown function
UHGV-0042659_20	eggNOG-mapper	1291050.JAGE01000001_gene1331	NA	NA
UHGV-0042659_21	PHROG	phrog_525	NA	unknown function
UHGV-0042659_21	UniRef90	UniRef90_T3DEM0	Putative phage protein	NA
UHGV-0042659_21	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-0042659_21	Pfam	PF20765	NA	DUF6838
UHGV-0042659_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0042659_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0042659_22	UniRef90	UniRef90_E7GN55	NA	NA
UHGV-0042659_22	eggNOG-mapper	742740.HMPREF9474_02350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0042659_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042659_22	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0042659_23	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0042659_23	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0042659_23	eggNOG-mapper	608534.GCWU000341_02290	NA	NA
UHGV-0042659_23	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0042659_24	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0042659_24	eggNOG-mapper	742740.HMPREF9474_02352	NA	NA
UHGV-0042659_24	Structural annotation	PF05135	NA	NA
UHGV-0042659_25	PHROG	phrog_247	major head protein	head and packaging
UHGV-0042659_25	UniRef90	UniRef90_A0A385Q530	Coat protein	NA
UHGV-0042659_25	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0042659_25	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0042659_25	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0042659_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0042659_26	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0042659_26	eggNOG-mapper	1567014.A0A0A7S0J5_9VIRU	Phage minor structural protein GP20	NA
UHGV-0042659_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0042659_26	Structural annotation	PF06810	NA	NA
UHGV-0042659_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0042659_27	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0042659_27	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0042659_27	Structural annotation	PF14359	NA	NA
UHGV-0042659_28	PHROG	phrog_6473	NA	unknown function
UHGV-0042659_28	eggNOG-mapper	1160721.RBI_I00624	NA	NA
UHGV-0042659_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0042659_29	UniRef90	UniRef90_A0A5M8BYE4	Phage_Mu_F domain-containing protein	NA
UHGV-0042659_29	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0042659_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0042659_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0042659_29	COG	COG2369	NA	NA
UHGV-0042659_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0042659_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0042659_30	UniRef90	UniRef90_A0A385Q1V7	Phage portal protein	NA
UHGV-0042659_30	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0042659_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042659_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0042659_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042659_31	PHROG	phrog_10250	NA	unknown function
UHGV-0042659_31	UniRef90	UniRef90_A0A385Q380	PBSX family phage terminase large subunit	NA
UHGV-0042659_31	eggNOG-mapper	1121105.ATXL01000006_gene1371	Terminase-like family	NA
UHGV-0042659_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042659_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042659_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042659_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0042659_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0042659_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0042659_32	UniRef90	UniRef90_UPI001592B6B8	terminase small subunit	NA
UHGV-0042659_32	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0042659_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0042659_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0042659_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0042659_32	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0042659_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0042659_33	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0042659_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0042659_33	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0042659_34	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0042659_34	UniRef90	UniRef90_UPI0009BD0FC4	helix-turn-helix domain-containing protein	NA
UHGV-0042659_34	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0042659_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0042659_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0042659_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0042659_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0042659_36	UniRef90	UniRef90_UPI00156FD326	helix-turn-helix domain-containing protein	NA
UHGV-0042659_36	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0042659_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042659_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042659_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0042659_37	UniRef90	UniRef90_A0A6L8XU54	Helix-turn-helix domain-containing protein	NA
UHGV-0042659_37	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0042659_38	PHROG	phrog_11939	NA	unknown function
UHGV-0042659_38	eggNOG-mapper	41431.PCC8801_4302	NA	NA
UHGV-0042659_38	Structural annotation	PF13031	NA	NA