UHGV-0042686

Genome information

Genome length 37,920 bps

CDS count 57

Completeness 98.10% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042686
vOTU ID	vOTU-069897
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_19972
BioSample	SAMEA2042114
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.96
Jumbo phage	No

Genome content
Genome length	37,920 bps
GC content	37.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.41%
Average CDS length	610.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042686_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0042686_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0042686_1	UniRef90	UniRef90_A0A415YC49	Recombinase family protein	NA
UHGV-0042686_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0042686_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0042686_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0042686_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0042686_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0042686_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0042686_2	PHROG	phrog_3727	NA	unknown function
UHGV-0042686_2	UniRef90	UniRef90_UPI00034248C7	glycosyl hydrolase lipoprotein	NA
UHGV-0042686_2	eggNOG-mapper	1274524.BSONL12_08597	NA	NA
UHGV-0042686_2	Structural annotation	PF16781, MF_00791, TIGR03780, COG2967	NA	NA
UHGV-0042686_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0042686_3	UniRef90	UniRef90_A0A415YC32	XRE family transcriptional regulator	NA
UHGV-0042686_3	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042686_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042686_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0042686_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0042686_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042686_4	UniRef90	UniRef90_UPI00156E4FED	helix-turn-helix domain-containing protein	NA
UHGV-0042686_4	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0042686_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042686_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042686_6	Structural annotation	PF07875	NA	NA
UHGV-0042686_11	PHROG	phrog_3777	NA	unknown function
UHGV-0042686_11	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0042686_11	Structural annotation	PF18441	NA	NA
UHGV-0042686_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042686_13	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0042686_13	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0042686_15	PHROG	phrog_824	NA	unknown function
UHGV-0042686_15	UniRef90	UniRef90_A0A5B3G7E5	VRR-NUC domain-containing protein	NA
UHGV-0042686_15	eggNOG-mapper	610130.Closa_0716	VRR_NUC	NA
UHGV-0042686_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0042686_16	Structural annotation	PF14084	NA	NA
UHGV-0042686_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0042686_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0042686_18	UniRef90	UniRef90_A0A174C0J7	Sporulation initiation inhibitor protein soj	NA
UHGV-0042686_18	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0042686_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0042686_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0042686_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0042686_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0042686_19	PHROG	phrog_15982	NA	unknown function
UHGV-0042686_19	UniRef90	UniRef90_A0A417V0R1	NA	NA
UHGV-0042686_19	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0042686_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0042686_19	Pfam	PF12961	NA	DUF3850
UHGV-0042686_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0042686_19	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0042686_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0042686_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0042686_21	UniRef90	UniRef90_A0A174C0A5	Single-stranded DNA-binding protein	NA
UHGV-0042686_21	eggNOG-mapper	411474.COPEUT_01783	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0042686_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0042686_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0042686_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0042686_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0042686_23	PHROG	phrog_151	transposase	integration and excision
UHGV-0042686_23	UniRef90	UniRef90_D4MVM1	Transposase	NA
UHGV-0042686_23	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0042686_23	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0042686_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0042686_23	Structural annotation	PF01710, NF040595, COG3415	NA	NA
UHGV-0042686_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0042686_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042686_24	UniRef90	UniRef90_L1Q0F3	DNA-binding helix-turn-helix protein	NA
UHGV-0042686_24	eggNOG-mapper	658088.HMPREF0987_01150	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042686_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042686_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042686_25	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0042686_26	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0042686_26	UniRef90	UniRef90_UPI00164BDD89	N-6 DNA methylase	NA
UHGV-0042686_26	eggNOG-mapper	349123.Lreu23DRAFT_3878	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0042686_26	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0042686_26	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0042686_26	Structural annotation	PF02475, MF_02217, NF000058, COG2263	NA	NA
UHGV-0042686_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0042686_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0042686_27	UniRef90	UniRef90_UPI00164B5A92	N-6 DNA methylase	NA
UHGV-0042686_27	eggNOG-mapper	1095750.HMPREF9970_0172	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0042686_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0042686_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0042686_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0042686_27	Structural annotation	PF02384, TIGR00497, COG0286	NA	NA
UHGV-0042686_28	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0042686_28	UniRef90	UniRef90_S9UCN0	Phage-like terminase small subunit yqas	NA
UHGV-0042686_28	eggNOG-mapper	1235792.C808_00606	NA	NA
UHGV-0042686_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0042686_28	COG	COG5484	NA	NA
UHGV-0042686_29	PHROG	phrog_30258	NA	unknown function
UHGV-0042686_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0042686_30	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-0042686_30	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0042686_30	Pfam	PF07374	NA	DUF1492
UHGV-0042686_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0042686_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0042686_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042686_31	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0042686_31	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0042686_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0042686_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0042686_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0042686_32	UniRef90	UniRef90_UPI001D57FD6D	P27 family phage terminase small subunit	NA
UHGV-0042686_32	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0042686_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0042686_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0042686_33	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0042686_33	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0042686_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0042686_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0042686_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0042686_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0042686_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0042686_34	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0042686_34	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0042686_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0042686_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0042686_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0042686_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0042686_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0042686_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0042686_35	UniRef90	UniRef90_D9R5G2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0042686_35	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0042686_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0042686_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0042686_35	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0042686_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0042686_36	UniRef90	UniRef90_A0A3E4M759	Phage major capsid protein	NA
UHGV-0042686_36	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0042686_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0042686_36	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0042686_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0042686_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0042686_36	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0042686_37	PHROG	phrog_749	NA	unknown function
UHGV-0042686_37	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0042686_38	PHROG	phrog_19734	NA	unknown function
UHGV-0042686_38	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0042686_38	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0042686_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0042686_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0042686_39	UniRef90	UniRef90_D9R5G6	Prophage pi2 protein 37	NA
UHGV-0042686_39	eggNOG-mapper	610130.Closa_0747	COG NOG18351 non supervised orthologous group	NA
UHGV-0042686_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042686_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0042686_40	PHROG	phrog_78	tail terminator	connector
UHGV-0042686_40	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0042686_40	Structural annotation	PF20765	NA	NA
UHGV-0042686_41	PHROG	phrog_88	major tail protein	tail
UHGV-0042686_41	UniRef90	UniRef90_A0A3E3ILX6	Phage tail protein	NA
UHGV-0042686_41	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0042686_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0042686_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0042686_42	PHROG	phrog_709	NA	unknown function
UHGV-0042686_42	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0042686_42	Structural annotation	PF11836	NA	NA
UHGV-0042686_43	PHROG	phrog_3033	NA	unknown function
UHGV-0042686_43	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0042686_44	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0042686_44	UniRef90	UniRef90_A0A1H0WFV4	Phage-related minor tail protein (Fragment)	NA
UHGV-0042686_44	eggNOG-mapper	658655.HMPREF0988_00531	Phage-related minor tail protein	NA
UHGV-0042686_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0042686_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0042686_44	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0042686_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0042686_45	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0042686_45	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0042686_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0042686_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0042686_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0042686_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0042686_46	PHROG	phrog_13289	tail protein	tail
UHGV-0042686_46	UniRef90	UniRef90_A0A1C6ES47	Phage-related protein	NA
UHGV-0042686_46	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0042686_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0042686_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0042686_46	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0042686_46	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0042686_47	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-0042686_47	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0042686_49	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0042686_49	PHROG	phrog_14008	NA	unknown function
UHGV-0042686_49	UniRef90	UniRef90_A0A1M6YAT2	Lysophospholipase L1	NA
UHGV-0042686_49	eggNOG-mapper	1337936.IJ00_20590	PFAM GDSL-like Lipase Acylhydrolase	NA
UHGV-0042686_49	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0042686_49	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0042686_49	Structural annotation	PF17182, NF007819, COG2755	NA	NA
UHGV-0042686_51	PHROG	phrog_199	holin	lysis
UHGV-0042686_51	UniRef90	UniRef90_UPI00033C89C4	phage holin family protein	NA
UHGV-0042686_51	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0042686_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0042686_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0042686_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0042686_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0042686_52	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0042686_52	PHROG	phrog_7	endolysin	lysis
UHGV-0042686_52	UniRef90	UniRef90_D4MWZ1	Lysozyme	NA
UHGV-0042686_52	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0042686_52	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0042686_52	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0042686_52	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0042686_52	HAMAP	MF_04110	Endolysin	NA
UHGV-0042686_52	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0042686_55	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042686_55	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-0042686_55	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0042686_55	Pfam	PF00847	AP2 domain	AP2
UHGV-0042686_55	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0042686_56	UniRef90	UniRef90_UPI001BC36F8D	Helix-turn-helix transcriptional regulator	NA
UHGV-0042686_56	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0042686_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0042686_56	Structural annotation	PF13443, NF000090, COG3655	NA	NA