UHGV-0042700

Genome information

Genome length 42,662 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042700
vOTU ID	vOTU-044894
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_24722
BioSample	SAMEA1972229
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.31
Jumbo phage	No

Genome content
Genome length	42,662 bps
GC content	48.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.87%
Average CDS length	671.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042700_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042700_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0042700_3	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0042700_3	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0042700_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042700_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042700_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042700_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0042700_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0042700_4	UniRef90	UniRef90_A0A8D9PDR4	Portal protein	NA
UHGV-0042700_4	eggNOG-mapper	86416.Clopa_2538	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0042700_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042700_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0042700_5	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0042700_6	PHROG	phrog_31538	NA	unknown function
UHGV-0042700_6	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0042700_7	PHROG	phrog_13589	NA	unknown function
UHGV-0042700_7	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0042700_9	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0042700_9	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0042700_9	Pfam	PF19789	NA	DUF6273
UHGV-0042700_9	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0042700_9	Structural annotation	PF19789	NA	NA
UHGV-0042700_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0042700_10	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0042700_10	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0042700_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0042700_10	Structural annotation	PF06810	NA	NA
UHGV-0042700_11	PHROG	phrog_247	major head protein	head and packaging
UHGV-0042700_11	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0042700_11	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0042700_11	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0042700_12	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0042700_12	UniRef90	UniRef90_A0A8D9UHB0	Putative head tail connector protein	NA
UHGV-0042700_12	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0042700_12	Structural annotation	PF20557	NA	NA
UHGV-0042700_13	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0042700_14	UniRef90	UniRef90_A0A8D9PDS5	Minor capsid protein	NA
UHGV-0042700_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042700_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0042700_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0042700_15	Structural annotation	PF12691	NA	NA
UHGV-0042700_16	PHROG	phrog_1407	major tail protein	tail
UHGV-0042700_16	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0042700_16	eggNOG-mapper	398512.JQKC01000005_gene5456	NA	NA
UHGV-0042700_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0042700_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042700_17	Structural annotation	PF11836	NA	NA
UHGV-0042700_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0042700_19	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0042700_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0042700_19	Structural annotation	PF21692, PF20155, TIGR01614, TIGR01760	NA	NA
UHGV-0042700_20	PHROG	phrog_1194	NA	unknown function
UHGV-0042700_20	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0042700_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0042700_21	PHROG	phrog_13879	NA	unknown function
UHGV-0042700_21	eggNOG-mapper	665956.HMPREF1032_03055	NA	NA
UHGV-0042700_21	Structural annotation	PF14594, PF00754, NF033848, COG3500, COG5156	NA	NA
UHGV-0042700_22	PHROG	phrog_18725	NA	unknown function
UHGV-0042700_22	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0042700_23	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0042700_24	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0042700_24	Structural annotation	PF07484	NA	NA
UHGV-0042700_26	PHROG	phrog_13256	NA	unknown function
UHGV-0042700_26	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0042700_27	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042700_27	PHROG	phrog_670	endolysin	lysis
UHGV-0042700_27	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0042700_27	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-0042700_27	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0042700_27	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0042700_27	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0042700_28	PHROG	phrog_4105	NA	unknown function
UHGV-0042700_28	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0042700_30	UniRef90	UniRef90_A0A8D9PDZ3	Holliday junction resolvase	NA
UHGV-0042700_30	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0042700_31	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0042700_31	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0042700_31	UniRef90	UniRef90_A0A8D9PDR8	Chromatin remodeling complex ATPase	NA
UHGV-0042700_31	eggNOG-mapper	1121333.JMLH01000042_gene2729	SNF2 family N-terminal domain protein	NA
UHGV-0042700_31	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0042700_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0042700_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0042700_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0042700_31	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0042700_32	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0042700_32	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0042700_32	UniRef90	UniRef90_A0A7C6W992	DNA polymerase I	NA
UHGV-0042700_32	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0042700_32	PADLOC	drt-cluster58	DRT	DRT
UHGV-0042700_32	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0042700_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0042700_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0042700_32	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0042700_33	KOfam	K00601	E2.1.2.2; phosphoribosylglycinamide formyltransferase [EC:2.1.2.2]	NA
UHGV-0042700_33	UniRef90	UniRef90_A0A2D6F1P4	Formyl_trans_N domain-containing protein	NA
UHGV-0042700_33	COG	COG0299	Folate-dependent phosphoribosylglycinamide formyltransferase PurN	NA
UHGV-0042700_33	Structural annotation	PF00551, MF_01930, TIGR00655, COG0299	NA	NA
UHGV-0042700_34	PHROG	phrog_19058	NA	unknown function
UHGV-0042700_34	UniRef90	UniRef90_A0A7T8IX45	DNA guanine transglycosylase	NA
UHGV-0042700_34	eggNOG-mapper	996637.SGM_5178	NA	NA
UHGV-0042700_34	Structural annotation	PF20314, MF_00168, TIGR00449, COG0343	NA	NA
UHGV-0042700_35	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-0042700_35	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0042700_35	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0042700_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0042700_36	UniRef90	UniRef90_A0A7C6S6P5	NA	NA
UHGV-0042700_36	eggNOG-mapper	749413.E5DV94_9VIRU	NA	NA
UHGV-0042700_36	Pfam	PF11753	NA	DUF3310
UHGV-0042700_36	Structural annotation	PF11753	NA	NA
UHGV-0042700_37	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0042700_37	UniRef90	UniRef90_A0A7C6S799	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0042700_37	eggNOG-mapper	873513.HMPREF6485_0886	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0042700_37	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0042700_37	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0042700_37	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0042700_38	UniRef90	UniRef90_A0A8D9UHA8	AspA family protein	NA
UHGV-0042700_38	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-0042700_39	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0042700_39	PHROG	phrog_18685	NA	unknown function
UHGV-0042700_39	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-0042700_39	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0042700_39	PADLOC	drt-cluster192	DRT	DRT
UHGV-0042700_39	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0042700_39	Pfam	PF13662	Toprim domain	Toprim_4
UHGV-0042700_39	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0042700_39	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0042700_39	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0042700_40	PHROG	phrog_3724	NA	unknown function
UHGV-0042700_40	eggNOG-mapper	1178540.BA70_16405	NA	NA
UHGV-0042700_40	Pfam	PF05037	NA	DUF669
UHGV-0042700_40	Structural annotation	PF05037, NF011800	NA	NA
UHGV-0042700_41	KOfam	K00059	fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]	NA
UHGV-0042700_41	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0042700_41	UniRef90	UniRef90_UPI0013D2E343	SDR family oxidoreductase	NA
UHGV-0042700_41	eggNOG-mapper	1506994.JNLQ01000001_gene171	Enoyl-(Acyl carrier protein) reductase	NA
UHGV-0042700_41	Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
UHGV-0042700_41	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA
UHGV-0042700_41	Structural annotation	PF13561, MF_01647, NF005474, COG1028	NA	NA
UHGV-0042700_42	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0042700_42	PHROG	phrog_4899	NA	unknown function
UHGV-0042700_42	UniRef90	UniRef90_UPI000E3E4EB9	VUT family protein	NA
UHGV-0042700_42	eggNOG-mapper	742722.HMPREF9463_00555	queuosine salvage	NA
UHGV-0042700_42	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0042700_42	COG	COG1738	NA	NA
UHGV-0042700_42	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0042700_43	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0042700_43	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-0042700_43	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0042700_43	Pfam	PF13479	AAA domain	AAA_24
UHGV-0042700_43	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0042700_43	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0042700_44	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0042700_44	PHROG	phrog_37855	NA	unknown function
UHGV-0042700_44	UniRef90	UniRef90_A0A645HNC1	Stage 0 sporulation protein A	NA
UHGV-0042700_44	eggNOG-mapper	718252.FP2_08180	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0042700_44	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0042700_44	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0042700_44	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0042700_45	Structural annotation	PF12659	NA	NA
UHGV-0042700_46	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042700_46	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0042700_46	COG	COG2887	RecB family exonuclease	NA
UHGV-0042700_46	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0042700_49	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-0042700_50	PHROG	phrog_6038	NA	unknown function
UHGV-0042700_56	Structural annotation	PF07754, NF011481, COG2888	NA	NA
UHGV-0042700_57	Structural annotation	PF10762, NF007968	NA	NA
UHGV-0042700_58	Structural annotation	PF13973, TIGR00739, COG4481	NA	NA