UHGV-0042723

Genome information

Genome length 37,445 bps

CDS count 61

Completeness 98.24% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042723
vOTU ID	vOTU-076839
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2794
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.7
Jumbo phage	No

Genome content
Genome length	37,445 bps
GC content	42.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.28%
Average CDS length	563.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042723_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0042723_1	PHROG	phrog_670	endolysin	lysis
UHGV-0042723_1	UniRef90	UniRef90_F7JQC6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0042723_1	eggNOG-mapper	658655.HMPREF0988_02541	Ami_2	NA
UHGV-0042723_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0042723_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0042723_1	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0042723_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0042723_1	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-0042723_2	Structural annotation	PF05339, MF_00535, NF002773, COG1476	NA	NA
UHGV-0042723_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0042723_3	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0042723_3	UniRef90	UniRef90_UPI0009FB6964	ORF6C domain-containing protein	NA
UHGV-0042723_3	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0042723_3	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0042723_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0042723_3	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0042723_3	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0042723_4	eggNOG-mapper	658655.HMPREF0988_02544	NA	NA
UHGV-0042723_4	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0042723_6	PHROG	phrog_18218	NA	unknown function
UHGV-0042723_6	UniRef90	UniRef90_A0A396PU34	Ribonuclease	NA
UHGV-0042723_6	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0042723_6	Structural annotation	PF06946	NA	NA
UHGV-0042723_7	PHROG	phrog_4105	NA	unknown function
UHGV-0042723_7	eggNOG-mapper	658655.HMPREF0988_02547	NA	NA
UHGV-0042723_9	PHROG	phrog_13141	NA	unknown function
UHGV-0042723_9	eggNOG-mapper	658655.HMPREF0988_02549	NA	NA
UHGV-0042723_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0042723_10	UniRef90	UniRef90_UPI001C3AB50C	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0042723_10	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0042723_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0042723_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0042723_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0042723_11	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0042723_11	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0042723_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0042723_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0042723_12	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0042723_12	COG	COG1511	NA	NA
UHGV-0042723_13	PHROG	phrog_5602	NA	unknown function
UHGV-0042723_13	eggNOG-mapper	1235792.C808_05376	NA	NA
UHGV-0042723_13	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA
UHGV-0042723_13	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0042723_14	PHROG	phrog_706	NA	unknown function
UHGV-0042723_14	UniRef90	UniRef90_UPI00195660EF	Gp15 family bacteriophage protein	NA
UHGV-0042723_14	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0042723_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0042723_14	Structural annotation	PF06854	NA	NA
UHGV-0042723_15	PHROG	phrog_4450	NA	unknown function
UHGV-0042723_15	eggNOG-mapper	658655.HMPREF0988_02554	NA	NA
UHGV-0042723_15	Pfam	PF20378	NA	DUF6673
UHGV-0042723_15	Structural annotation	PF20378	NA	NA
UHGV-0042723_16	PHROG	phrog_3099	NA	unknown function
UHGV-0042723_16	eggNOG-mapper	658655.HMPREF0988_02555	NA	NA
UHGV-0042723_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042723_17	PHROG	phrog_3266	tail completion	connector
UHGV-0042723_17	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0042723_17	Structural annotation	PF12691	NA	NA
UHGV-0042723_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0042723_18	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0042723_18	eggNOG-mapper	658655.HMPREF0988_02557	NA	NA
UHGV-0042723_18	Structural annotation	PF11114	NA	NA
UHGV-0042723_19	PHROG	phrog_3366	NA	unknown function
UHGV-0042723_19	eggNOG-mapper	658655.HMPREF0988_02558	NA	NA
UHGV-0042723_19	Pfam	PF20536	NA	DUF6751
UHGV-0042723_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0042723_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0042723_20	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0042723_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0042723_21	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0042723_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0042723_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0042723_22	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0042723_22	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0042723_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0042723_22	Structural annotation	PF06810	NA	NA
UHGV-0042723_23	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0042723_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0042723_24	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0042723_24	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0042723_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0042723_24	COG	COG2369	NA	NA
UHGV-0042723_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0042723_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0042723_25	UniRef90	UniRef90_A0A174B716	Phage portal protein, putative, A118 family	NA
UHGV-0042723_25	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0042723_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0042723_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042723_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0042723_26	UniRef90	UniRef90_F7JQW2	PBSX family phage terminase, large subunit	NA
UHGV-0042723_26	eggNOG-mapper	658655.HMPREF0988_02565	Phage terminase large subunit	NA
UHGV-0042723_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042723_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042723_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042723_26	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0042723_27	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0042723_27	UniRef90	UniRef90_UPI001E5C3DAC	phage terminase small subunit	NA
UHGV-0042723_27	eggNOG-mapper	658655.HMPREF0988_02566	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0042723_27	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0042723_27	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0042723_27	COG	COG5484	NA	NA
UHGV-0042723_27	Structural annotation	PF06056, NF040785, COG5484	NA	NA
UHGV-0042723_28	PHROG	phrog_1758	acetyltransferase	other
UHGV-0042723_28	UniRef90	UniRef90_A0A6L9H8L8	N-acetyltransferase	NA
UHGV-0042723_28	eggNOG-mapper	658655.HMPREF0988_02567	acetyltransferase	NA
UHGV-0042723_28	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0042723_28	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0042723_29	PHROG	phrog_3291	NA	unknown function
UHGV-0042723_29	eggNOG-mapper	658655.HMPREF0988_02568	NA	NA
UHGV-0042723_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0042723_30	UniRef90	UniRef90_A0A396PTA3	NA	NA
UHGV-0042723_30	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0042723_30	Pfam	PF07374	NA	DUF1492
UHGV-0042723_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0042723_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0042723_33	PHROG	phrog_15198	NA	unknown function
UHGV-0042723_33	UniRef90	UniRef90_F7JQE9	NA	NA
UHGV-0042723_33	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0042723_33	Pfam	PF04448	NA	DUF551
UHGV-0042723_33	Structural annotation	PF04448	NA	NA
UHGV-0042723_36	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0042723_36	UniRef90	UniRef90_UPI001594A542	NA	NA
UHGV-0042723_36	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-0042723_37	PHROG	phrog_25555	NA	unknown function
UHGV-0042723_39	PHROG	phrog_3253	NA	unknown function
UHGV-0042723_39	eggNOG-mapper	658655.HMPREF0988_02578	NA	NA
UHGV-0042723_40	eggNOG-mapper	658655.HMPREF0988_02579	NA	NA
UHGV-0042723_40	Structural annotation	MF_00773, NF041909, COG2888	NA	NA
UHGV-0042723_41	PHROG	phrog_23374	NA	unknown function
UHGV-0042723_41	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0042723_42	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0042723_42	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0042723_42	eggNOG-mapper	658655.HMPREF0988_02581	NA	NA
UHGV-0042723_42	Pfam	PF06048	NA	DUF927
UHGV-0042723_42	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0042723_42	COG	COG5519	NA	NA
UHGV-0042723_42	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0042723_43	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0042723_43	PHROG	phrog_11992	NA	unknown function
UHGV-0042723_43	UniRef90	UniRef90_F7JQW9	ZnF_CHCC domain-containing protein	NA
UHGV-0042723_43	eggNOG-mapper	658655.HMPREF0988_02582	CHC2 zinc finger	NA
UHGV-0042723_43	PADLOC	drt-UG29	DRT	DRT
UHGV-0042723_43	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0042723_43	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0042723_43	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0042723_44	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0042723_44	UniRef90	UniRef90_F7JQF5	ERCC4 domain-containing protein	NA
UHGV-0042723_44	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0042723_44	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0042723_44	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0042723_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0042723_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0042723_45	UniRef90	UniRef90_F7JQF6	Single-stranded DNA-binding protein	NA
UHGV-0042723_45	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0042723_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0042723_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0042723_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0042723_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0042723_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0042723_46	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0042723_46	UniRef90	UniRef90_UPI001D0680AD	ERF family protein	NA
UHGV-0042723_46	eggNOG-mapper	658655.HMPREF0988_02585	ERF superfamily	NA
UHGV-0042723_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0042723_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0042723_46	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0042723_48	PHROG	phrog_674	NA	unknown function
UHGV-0042723_48	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0042723_48	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-0042723_48	Pfam	PF07083	NA	DUF1351
UHGV-0042723_48	Structural annotation	PF07083	NA	NA
UHGV-0042723_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0042723_53	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0042723_53	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-0042723_53	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0042723_53	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0042723_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0042723_53	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0042723_53	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0042723_54	UniRef90	UniRef90_F7JQG4	HTH cro/C1-type domain-containing protein	NA
UHGV-0042723_54	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0042723_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042723_54	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0042723_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0042723_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042723_55	UniRef90	UniRef90_F7JQG5	HTH cro/C1-type domain-containing protein	NA
UHGV-0042723_55	eggNOG-mapper	658655.HMPREF0988_02594	Helix-turn-helix	NA
UHGV-0042723_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042723_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0042723_55	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0042723_56	PHROG	phrog_87	metallo-protease	other
UHGV-0042723_56	UniRef90	UniRef90_F7JQG6	Peptidase_M78 domain-containing protein	NA
UHGV-0042723_56	eggNOG-mapper	658655.HMPREF0988_02595	Zn peptidase	NA
UHGV-0042723_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0042723_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0042723_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0042723_59	Structural annotation	PF15968	NA	NA
UHGV-0042723_60	PHROG	phrog_16228	NA	unknown function
UHGV-0042723_60	UniRef90	UniRef90_F7JQH0	Uma2 domain-containing protein	NA
UHGV-0042723_60	eggNOG-mapper	658655.HMPREF0988_02599	Putative restriction endonuclease	NA
UHGV-0042723_60	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0042723_60	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0042723_60	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0042723_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0042723_61	PHROG	phrog_95	integrase	integration and excision
UHGV-0042723_61	UniRef90	UniRef90_UPI00097575B6	recombinase family protein	NA
UHGV-0042723_61	eggNOG-mapper	658655.HMPREF0988_02600	Resolvase, N terminal domain	NA
UHGV-0042723_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0042723_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0042723_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0042723_61	Structural annotation	PF00239, NF041201, COG1961	NA	NA