UHGV-0042759

Genome information

Genome length 28,494 bps

CDS count 39

Completeness 83.46% (medium-quality)

geNomad score 0.9608

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042759
vOTU ID	vOTU-036828
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5250
BioSample	SAMEA728929
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9608
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.69
Jumbo phage	No

Genome content
Genome length	28,494 bps
GC content	43.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	91.81%
Average CDS length	675.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042759_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0042759_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0042759_1	UniRef90	UniRef90_A0A6N4APD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0042759_1	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0042759_1	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0042759_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0042759_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0042759_1	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0042759_2	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0042759_2	UniRef90	UniRef90_UPI000F52F993	BRO family protein	NA
UHGV-0042759_2	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-0042759_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0042759_2	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0042759_2	COG	COG3617	Prophage antirepressor	NA
UHGV-0042759_2	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0042759_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0042759_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042759_3	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-0042759_3	eggNOG-mapper	1235792.C808_01473	Helix-turn-helix XRE-family like proteins	NA
UHGV-0042759_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042759_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0042759_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0042759_7	PHROG	phrog_310	transposase	integration and excision
UHGV-0042759_7	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-0042759_7	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0042759_7	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0042759_7	Pfam	PF00665	Integrase core domain	rve
UHGV-0042759_7	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0042759_7	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0042759_7	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0042759_8	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0042759_8	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0042759_8	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0042759_8	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0042759_8	Pfam	PF13401	AAA domain	AAA_22
UHGV-0042759_8	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0042759_8	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0042759_9	PHROG	phrog_4292	NA	unknown function
UHGV-0042759_9	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-0042759_12	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-0042759_12	eggNOG-mapper	663278.Ethha_0081	SpoVT / AbrB like domain	NA
UHGV-0042759_12	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0042759_12	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0042759_13	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0042759_13	AcrCatalog	cluster_71843	NA	NA
UHGV-0042759_14	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0042759_14	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0042759_14	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0042759_14	Structural annotation	PF06252	NA	NA
UHGV-0042759_15	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0042759_15	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0042759_15	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0042759_16	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0042759_17	PHROG	phrog_25462	NA	unknown function
UHGV-0042759_17	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0042759_17	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0042759_17	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0042759_18	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0042759_18	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-0042759_18	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0042759_18	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0042759_18	Structural annotation	PF11985	NA	NA
UHGV-0042759_19	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0042759_19	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0042759_19	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0042759_19	eggNOG-mapper	1121115.AXVN01000044_gene2027	Transcription termination	NA
UHGV-0042759_19	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0042759_19	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0042759_19	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0042759_20	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0042759_20	Structural annotation	PF07141	NA	NA
UHGV-0042759_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042759_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0042759_21	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0042759_21	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0042759_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042759_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042759_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042759_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0042759_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0042759_22	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-0042759_22	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0042759_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042759_22	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0042759_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0042759_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0042759_23	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0042759_23	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0042759_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0042759_23	COG	COG2369	NA	NA
UHGV-0042759_23	Structural annotation	PF06152	NA	NA
UHGV-0042759_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0042759_24	eggNOG-mapper	195103.CPF_0955	NA	NA
UHGV-0042759_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0042759_25	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0042759_25	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0042759_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0042759_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0042759_27	eggNOG-mapper	986075.CathTA2_0698	NA	NA
UHGV-0042759_28	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0042759_28	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-0042759_28	eggNOG-mapper	1295642.H839_08324	Minor capsid protein	NA
UHGV-0042759_28	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0042759_28	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0042759_28	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0042759_29	UniRef90	UniRef90_A0A174ZTE4	Minor capsid protein	NA
UHGV-0042759_29	eggNOG-mapper	1231057.AMGD01000018_gene3615	Minor capsid protein	NA
UHGV-0042759_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0042759_30	Structural annotation	PF12691	NA	NA
UHGV-0042759_31	PHROG	phrog_820	major tail protein	tail
UHGV-0042759_31	UniRef90	UniRef90_A0A0R1N259	Minor capsid protein	NA
UHGV-0042759_31	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0042759_31	COG	COG5492	NA	NA
UHGV-0042759_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042759_32	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0042759_32	Structural annotation	PF10666	NA	NA
UHGV-0042759_33	PHROG	phrog_706	NA	unknown function
UHGV-0042759_33	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-0042759_33	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-0042759_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0042759_33	Structural annotation	PF06854	NA	NA
UHGV-0042759_34	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0042759_34	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-0042759_34	eggNOG-mapper	1151292.QEW_4525	nuclear chromosome segregation	NA
UHGV-0042759_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0042759_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0042759_34	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0042759_35	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0042759_36	PHROG	phrog_10316	tail fiber protein	tail
UHGV-0042759_36	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0042759_36	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0042759_36	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0042759_38	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0042759_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0042759_39	PHROG	phrog_291	endolysin	lysis
UHGV-0042759_39	UniRef90	UniRef90_A0A175A0A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0042759_39	eggNOG-mapper	537007.BLAHAN_06873	Glycosyl hydrolases family 25	NA
UHGV-0042759_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0042759_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0042759_39	Structural annotation	PF01183, COG3757	NA	NA