UHGV-0042815

Genome information

vOTU vOTU-019092

Genome length 36,791 bps

CDS count 53

Completeness 89.07% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042815
vOTU ID	vOTU-019092
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_10445
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.92
Jumbo phage	No

Genome content
Genome length	36,791 bps
GC content	41.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.21%
Average CDS length	653.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042815_1	PHROG	phrog_199	holin	lysis
UHGV-0042815_1	UniRef90	UniRef90_A0A173VKF9	Holin	NA
UHGV-0042815_1	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0042815_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0042815_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0042815_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0042815_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0042815_2	eggNOG-mapper	641107.CDLVIII_1197	NA	NA
UHGV-0042815_3	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0042815_3	PHROG	phrog_9478	minor tail protein	tail
UHGV-0042815_3	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-0042815_3	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0042815_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0042815_3	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0042815_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0042815_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0042815_4	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0042815_4	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-0042815_4	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-0042815_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0042815_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0042815_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0042815_4	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0042815_5	PHROG	phrog_1204	tail protein	tail
UHGV-0042815_5	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-0042815_5	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-0042815_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0042815_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0042815_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0042815_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0042815_6	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0042815_6	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0042815_6	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0042815_7	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0042815_7	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-0042815_7	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0042815_7	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0042815_7	Structural annotation	PF12363	NA	NA
UHGV-0042815_8	PHROG	phrog_238	major tail protein	tail
UHGV-0042815_8	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-0042815_8	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0042815_8	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0042815_8	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0042815_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0042815_9	PHROG	phrog_176	tail terminator	connector
UHGV-0042815_9	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-0042815_9	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0042815_9	Structural annotation	PF11367	NA	NA
UHGV-0042815_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0042815_10	UniRef90	UniRef90_UPI00111124B6	HK97 gp10 family phage protein	NA
UHGV-0042815_10	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0042815_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0042815_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0042815_10	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0042815_11	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0042815_11	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0042815_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0042815_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0042815_12	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-0042815_12	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0042815_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0042815_12	Structural annotation	PF05135	NA	NA
UHGV-0042815_13	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0042815_13	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-0042815_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-0042815_14	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-0042815_14	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0042815_14	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0042815_14	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0042815_15	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0042815_15	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-0042815_15	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0042815_15	Pfam	PF14265	NA	DUF4355
UHGV-0042815_15	Structural annotation	PF14265	NA	NA
UHGV-0042815_16	KOfam	K07584	NA	NA
UHGV-0042815_16	PHROG	phrog_4478	peptidase	other
UHGV-0042815_16	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-0042815_16	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0042815_16	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0042815_16	COG	COG2868	NA	NA
UHGV-0042815_16	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0042815_17	PHROG	phrog_1233	NA	unknown function
UHGV-0042815_17	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0042815_18	PHROG	phrog_3675	NA	unknown function
UHGV-0042815_18	UniRef90	UniRef90_UPI001C027742	YjcQ family protein	NA
UHGV-0042815_18	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0042815_18	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0042815_18	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0042815_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0042815_22	UniRef90	UniRef90_UPI001C023785	minor capsid protein	NA
UHGV-0042815_22	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0042815_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0042815_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0042815_22	COG	COG2369	NA	NA
UHGV-0042815_22	Structural annotation	PF04233, PF04002, TIGR01641, NF000642, COG2003, COG2369	NA	NA
UHGV-0042815_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0042815_23	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-0042815_23	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0042815_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0042815_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0042815_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0042815_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0042815_24	PHROG	phrog_10250	NA	unknown function
UHGV-0042815_24	UniRef90	UniRef90_UPI001C023397	PBSX family phage terminase large subunit	NA
UHGV-0042815_24	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0042815_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0042815_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0042815_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0042815_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0042815_25	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0042815_25	UniRef90	UniRef90_UPI001C027893	phage terminase small subunit	NA
UHGV-0042815_25	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0042815_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0042815_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0042815_25	COG	COG5484	NA	NA
UHGV-0042815_25	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0042815_26	PHROG	phrog_11237	NA	unknown function
UHGV-0042815_26	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0042815_27	PHROG	phrog_6568	NA	unknown function
UHGV-0042815_30	PHROG	phrog_24386	NA	unknown function
UHGV-0042815_30	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0042815_30	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0042815_32	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0042815_33	PHROG	phrog_8684	NA	unknown function
UHGV-0042815_33	UniRef90	UniRef90_UPI001C0F317C	YopX family protein	NA
UHGV-0042815_33	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0042815_33	Pfam	PF09643	YopX protein	YopX
UHGV-0042815_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0042815_35	PHROG	phrog_7566	NA	unknown function
UHGV-0042815_35	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0042815_36	PHROG	phrog_15077	NA	unknown function
UHGV-0042815_36	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0042815_36	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0042815_37	PHROG	phrog_8470	NA	unknown function
UHGV-0042815_37	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0042815_37	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0042815_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0042815_37	Structural annotation	PF14284	NA	NA
UHGV-0042815_38	PHROG	phrog_4433	NA	unknown function
UHGV-0042815_38	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0042815_38	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0042815_39	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0042815_40	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0042815_40	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0042815_40	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-0042815_40	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0042815_40	Pfam	PF00075	RNase H	RNase_H
UHGV-0042815_40	COG	COG0328	Ribonuclease HI	NA
UHGV-0042815_40	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0042815_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0042815_42	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0042815_42	Structural annotation	PF01446	NA	NA
UHGV-0042815_45	eggNOG-mapper	365044.Pnap_1043	NA	NA
UHGV-0042815_45	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0042815_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042815_47	UniRef90	UniRef90_A0A414S2U7	XRE family transcriptional regulator	NA
UHGV-0042815_47	eggNOG-mapper	12417.Q9T1J3_9CAUD	sequence-specific DNA binding	NA
UHGV-0042815_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0042815_47	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0042815_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0042815_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0042815_48	UniRef90	UniRef90_A6BEU9	DNA-binding helix-turn-helix protein	NA
UHGV-0042815_48	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0042815_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0042815_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0042815_48	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0042815_49	PHROG	phrog_20886	NA	unknown function
UHGV-0042815_49	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0042815_49	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0042815_49	Structural annotation	PF06114	NA	NA
UHGV-0042815_50	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0042815_50	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0042815_50	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-0042815_50	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0042815_50	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0042815_50	COG	COG4748	NA	NA
UHGV-0042815_50	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0042815_51	KOfam	K21463	tcaA; membrane-associated protein TcaA	NA
UHGV-0042815_51	UniRef90	UniRef90_A0A173VJ11	Predicted membrane protein	NA
UHGV-0042815_51	eggNOG-mapper	411461.DORFOR_01127	NA	NA
UHGV-0042815_51	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0042815_52	PHROG	phrog_10226	NA	unknown function
UHGV-0042815_52	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0042815_52	Structural annotation	COG4127	NA	NA