UHGV-0043007

Genome information

Genome length 34,294 bps

CDS count 70

Completeness 66.15% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043007
vOTU ID	vOTU-036910
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5344
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.83
Jumbo phage	No

Genome content
Genome length	34,294 bps
GC content	51.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.51%
Average CDS length	441.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043007_2	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043007_2	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043007_2	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0043007_3	PHROG	phrog_859	portal protein	head and packaging
UHGV-0043007_3	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0043007_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0043007_3	COG	COG2369	NA	NA
UHGV-0043007_3	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0043007_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0043007_5	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0043007_5	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0043007_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043007_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0043007_6	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0043007_6	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-0043007_6	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0043007_6	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0043007_8	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0043007_9	eggNOG-mapper	1463887.KL589968_gene7396	NA	NA
UHGV-0043007_10	PHROG	phrog_5475	NA	unknown function
UHGV-0043007_10	UniRef90	UniRef90_A0A1V9QNH1	ParB domain-containing protein	NA
UHGV-0043007_10	eggNOG-mapper	399741.Spro_4926	Methyltransferase domain	NA
UHGV-0043007_10	Pfam	PF13489	Methyltransferase domain	Methyltransf_23
UHGV-0043007_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0043007_11	PHROG	phrog_5475	NA	unknown function
UHGV-0043007_11	UniRef90	UniRef90_A0A4Q2YT29	Methyltransferase domain-containing protein (Fragment)	NA
UHGV-0043007_11	eggNOG-mapper	1348663.KCH_26310	chromosome segregation	NA
UHGV-0043007_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0043007_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043007_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0043007_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0043007_12	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0043007_12	UniRef90	UniRef90_A0A173W6N8	ParB-like nuclease domain	NA
UHGV-0043007_12	eggNOG-mapper	211110.gbs1120	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0043007_12	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0043007_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043007_12	COG	COG0863	DNA modification methylase	NA
UHGV-0043007_13	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0043007_13	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0043007_13	eggNOG-mapper	411483.FAEPRAA2165_02111	YodL-like	NA
UHGV-0043007_13	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0043007_14	PHROG	phrog_25027	NA	unknown function
UHGV-0043007_14	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-0043007_14	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0043007_14	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0043007_16	Structural annotation	PF10723, NF008671, COG4226	NA	NA
UHGV-0043007_20	Structural annotation	PF04545, MF_00674, NF001072, COG1342	NA	NA
UHGV-0043007_22	PHROG	phrog_824	NA	unknown function
UHGV-0043007_22	UniRef90	UniRef90_K1REM0	VRR-NUC domain protein	NA
UHGV-0043007_22	eggNOG-mapper	1408428.JNJP01000030_gene973	VRR_NUC	NA
UHGV-0043007_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0043007_26	Structural annotation	PF06257, NF011227	NA	NA
UHGV-0043007_27	Structural annotation	TIGR03655	NA	NA
UHGV-0043007_30	Pfam	PF04448	NA	DUF551
UHGV-0043007_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0043007_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0043007_31	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0043007_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0043007_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0043007_32	UniRef90	UniRef90_K1RYG5	Prophage antirepressor	NA
UHGV-0043007_32	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-0043007_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0043007_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0043007_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0043007_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0043007_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0043007_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0043007_33	UniRef90	UniRef90_K1UYR3	Replicative DNA helicase (Fragment)	NA
UHGV-0043007_33	eggNOG-mapper	395494.Galf_2031	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0043007_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0043007_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0043007_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0043007_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0043007_34	UniRef90	UniRef90_K1TUR1	NA	NA
UHGV-0043007_34	Structural annotation	PF19808, COG3935	NA	NA
UHGV-0043007_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043007_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043007_35	UniRef90	UniRef90_K1U2S6	Single-strand DNA-binding protein	NA
UHGV-0043007_35	eggNOG-mapper	1392501.JIAC01000001_gene2220	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0043007_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043007_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043007_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043007_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043007_35	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0043007_36	PHROG	phrog_398	NA	unknown function
UHGV-0043007_36	UniRef90	UniRef90_K1U9S1	NA	NA
UHGV-0043007_36	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0043007_36	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0043007_36	Structural annotation	PF16784	NA	NA
UHGV-0043007_41	PHROG	phrog_6721	NA	unknown function
UHGV-0043007_41	eggNOG-mapper	679192.HMPREF9013_1123	NA	NA
UHGV-0043007_41	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-0043007_43	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043007_43	UniRef90	UniRef90_A0A7U9PED5	ERF superfamily protein	NA
UHGV-0043007_43	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0043007_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-0043007_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043007_43	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0043007_45	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0043007_45	UniRef90	UniRef90_UPI0005B25BA0	host-nuclease inhibitor Gam family protein	NA
UHGV-0043007_45	eggNOG-mapper	697281.Mahau_0089	Bacteriophage Mu Gam like protein	NA
UHGV-0043007_45	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0043007_45	Structural annotation	PF07352	NA	NA
UHGV-0043007_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0043007_47	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0043007_47	UniRef90	UniRef90_A0A136Q823	DNA-binding helix-turn-helix protein	NA
UHGV-0043007_47	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0043007_47	COG	COG2319	WD40 repeat	NA
UHGV-0043007_47	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0043007_51	UniRef90	UniRef90_K1U9S5	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0043007_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043007_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0043007_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0043007_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043007_53	UniRef90	UniRef90_A0A2U3CVV8	HTH cro/C1-type domain-containing protein	NA
UHGV-0043007_53	eggNOG-mapper	1154860.SAG0136_02370	Transcriptional regulator	NA
UHGV-0043007_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0043007_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043007_53	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0043007_54	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0043007_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043007_54	UniRef90	UniRef90_K1UES9	Transcriptional regulator	NA
UHGV-0043007_54	eggNOG-mapper	1395587.P364_0124760	Transcriptional regulator	NA
UHGV-0043007_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043007_54	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0043007_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043007_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043007_55	UniRef90	UniRef90_K1UYS1	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0043007_55	eggNOG-mapper	1280390.CBQR020000010_gene258	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043007_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043007_55	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043007_57	UniRef90	UniRef90_K1U8T0	Arc domain-containing protein	NA
UHGV-0043007_57	eggNOG-mapper	742733.HMPREF9469_03082	Arc-like DNA binding domain	NA
UHGV-0043007_57	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0043007_57	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0043007_61	UniRef90	UniRef90_K1U3G0	Transcriptional regulator, XRE family	NA
UHGV-0043007_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043007_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0043007_62	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0043007_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043007_62	UniRef90	UniRef90_A0A3A9INB1	XRE family transcriptional regulator	NA
UHGV-0043007_62	eggNOG-mapper	864563.HMPREF9166_0595	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043007_62	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0043007_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043007_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043007_63	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0043007_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_63	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0043007_63	Structural annotation	PF03374, PF01381, MF_00535, NF041951, COG1476, COG3645	NA	NA
UHGV-0043007_64	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0043007_64	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0043007_64	UniRef90	UniRef90_K1TNQ1	Transcriptional regulator	NA
UHGV-0043007_64	eggNOG-mapper	1388763.O165_011090	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0043007_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043007_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0043007_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043007_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043007_65	UniRef90	UniRef90_K1TK02	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0043007_65	eggNOG-mapper	1121428.DESHY_60027___1	PFAM helix-turn-helix domain protein	NA
UHGV-0043007_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043007_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043007_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043007_67	KOfam	K14059	int; integrase	NA
UHGV-0043007_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0043007_67	UniRef90	UniRef90_A0A1Q6PWD2	Tyr recombinase domain-containing protein	NA
UHGV-0043007_67	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0043007_67	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0043007_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043007_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043007_67	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0043007_69	PHROG	phrog_28802	NA	unknown function
UHGV-0043007_69	Structural annotation	PF12510	NA	NA
UHGV-0043007_70	PHROG	phrog_20016	NA	unknown function
UHGV-0043007_70	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0043007_70	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0043007_70	Structural annotation	PF18573, NF033147	NA	NA